File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a9ec71914426a72b81d0877ec00501/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (659_dDe_T1_TRNA_1_B2372Y3LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/d199c333c1b5aa1e0f1e6a9ccc5f12/659_dDe_T1_TRNA_1_B2372Y3LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/443624d66ccce77376ae957810393a/659_dDe_T1_TRNA_1_B2372Y3LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a9ec71914426a72b81d0877ec00501/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/a9ec71914426a72b81d0877ec00501/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_dDe_T1_TRNA_1_B2372Y3LT4_1/abundance.h5
Successfully converted 659_dDe_T1_TRNA_1_B2372Y3LT4_1/abundance.h5 to 659_dDe_T1_TRNA_1_B2372Y3LT4_1_kallisto_mqc.tsv
  Sample: 659_dDe_T1_TRNA_1_B2372Y3LT4_1
  Mean Fragment Length: 162.3 bp
  Median Fragment Length: 151.0 bp
  pct_mito_est_counts: 0.016%
  pct_ribo_est_counts: 1.096%
  pct_hk_est_counts: 0.311%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.035%
  pct_ribo_tpm: 3.784%
  pct_hk_tpm: 0.549%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.143%