Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/00e8e20f8ff9e4600ecc779d9ad32e/dna_s762.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/e59e7295efa3205a22cafae7b0f8b4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/e59e7295efa3205a22cafae7b0f8b4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/707afaa89e2f9dc33c25e6844e4784/dna_s762.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: dna_s762.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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