File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/da3ca3e5214161b2973639bef426c9/.command.sh
Size
517 bytes
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s769)
Attempt

Content

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#!/bin/bash -euo pipefail
cat dna_s769_S39_L001_R1_001.fastq.gz dna_s769_S39_L002_R1_001.fastq.gz dna_s769_S39_L003_R1_001.fastq.gz dna_s769_S39_L004_R1_001.fastq.gz > dna_s769_R1.fastq.gz
cat dna_s769_S39_L001_R2_001.fastq.gz dna_s769_S39_L002_R2_001.fastq.gz dna_s769_S39_L003_R2_001.fastq.gz dna_s769_S39_L004_R2_001.fastq.gz > dna_s769_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS