Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/0da8e3cf24966024b21db76ece6004/dna_s759.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/4bc6d1818abde5586055842bb38ed4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/4bc6d1818abde5586055842bb38ed4/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT dna_s759.Aligned.sortedByCoord.out.bam --OUTPUT dna_s759.md.bam --METRICS_FILE dna_s759.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
07:51:53.875 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 07:51:53 GMT 2026] MarkDuplicates --INPUT dna_s759.Aligned.sortedByCoord.out.bam --OUTPUT dna_s759.md.bam --METRICS_FILE dna_s759.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 07:51:53 GMT 2026] Executing as ?@nf-4c4bc6d1818abde5586055842bb38ed4-4b9e6-mlphv on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 07:51:53 MarkDuplicates Start of doWork freeMemory: 105830712; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 07:51:53 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 07:51:53 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 07:51:59 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:2,558,325
INFO 2026-06-08 07:51:59 MarkDuplicates Tracking 3663 as yet unmatched pairs. 1341 records in RAM.
INFO 2026-06-08 07:52:02 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 3s. Last read position: chr1:9,728,559
INFO 2026-06-08 07:52:02 MarkDuplicates Tracking 8855 as yet unmatched pairs. 2783 records in RAM.
INFO 2026-06-08 07:52:05 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:12,942,263
INFO 2026-06-08 07:52:05 MarkDuplicates Tracking 10389 as yet unmatched pairs. 1166 records in RAM.
INFO 2026-06-08 07:52:08 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 3s. Last read position: chr1:16,155,745
INFO 2026-06-08 07:52:08 MarkDuplicates Tracking 13114 as yet unmatched pairs. 1072 records in RAM.
INFO 2026-06-08 07:52:11 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 3s. Last read position: chr1:18,735,746
INFO 2026-06-08 07:52:11 MarkDuplicates Tracking 17387 as yet unmatched pairs. 2737 records in RAM.
INFO 2026-06-08 07:52:14 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:23,559,001
INFO 2026-06-08 07:52:14 MarkDuplicates Tracking 19863 as yet unmatched pairs. 1856 records in RAM.
INFO 2026-06-08 07:52:17 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 3s. Last read position: chr1:27,989,697
INFO 2026-06-08 07:52:17 MarkDuplicates Tracking 22439 as yet unmatched pairs. 1252 records in RAM.
INFO 2026-06-08 07:52:20 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:35,451,621
INFO 2026-06-08 07:52:20 MarkDuplicates Tracking 26639 as yet unmatched pairs. 1573 records in RAM.
INFO 2026-06-08 07:52:22 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:39,901,614
INFO 2026-06-08 07:52:22 MarkDuplicates Tracking 31249 as yet unmatched pairs. 3039 records in RAM.
INFO 2026-06-08 07:52:25 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:45,034,268
INFO 2026-06-08 07:52:25 MarkDuplicates Tracking 33400 as yet unmatched pairs. 1784 records in RAM.
INFO 2026-06-08 07:52:28 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:51,321,783
INFO 2026-06-08 07:52:28 MarkDuplicates Tracking 37302 as yet unmatched pairs. 1925 records in RAM.
INFO 2026-06-08 07:52:30 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:62,210,461
INFO 2026-06-08 07:52:30 MarkDuplicates Tracking 41969 as yet unmatched pairs. 2128 records in RAM.
INFO 2026-06-08 07:52:33 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:74,572,233
INFO 2026-06-08 07:52:33 MarkDuplicates Tracking 47383 as yet unmatched pairs. 2238 records in RAM.
INFO 2026-06-08 07:52:36 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 3s. Last read position: chr1:90,007,345
INFO 2026-06-08 07:52:36 MarkDuplicates Tracking 53075 as yet unmatched pairs. 2341 records in RAM.
INFO 2026-06-08 07:52:40 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 3s. Last read position: chr1:103,620,505
INFO 2026-06-08 07:52:40 MarkDuplicates Tracking 58983 as yet unmatched pairs. 3028 records in RAM.
INFO 2026-06-08 07:52:42 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:109,738,376
INFO 2026-06-08 07:52:42 MarkDuplicates Tracking 60845 as yet unmatched pairs. 2204 records in RAM.
INFO 2026-06-08 07:52:45 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:116,942,321
INFO 2026-06-08 07:52:45 MarkDuplicates Tracking 64714 as yet unmatched pairs. 2159 records in RAM.
INFO 2026-06-08 07:52:47 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:120,931,243
INFO 2026-06-08 07:52:47 MarkDuplicates Tracking 67846 as yet unmatched pairs. 2168 records in RAM.
INFO 2026-06-08 07:52:49 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:146,155,958
INFO 2026-06-08 07:52:49 MarkDuplicates Tracking 71618 as yet unmatched pairs. 2922 records in RAM.
INFO 2026-06-08 07:52:51 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:149,944,689
INFO 2026-06-08 07:52:51 MarkDuplicates Tracking 73209 as yet unmatched pairs. 2316 records in RAM.
INFO 2026-06-08 07:52:53 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:152,350,856
INFO 2026-06-08 07:52:53 MarkDuplicates Tracking 75992 as yet unmatched pairs. 2403 records in RAM.
INFO 2026-06-08 07:52:56 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:155,766,605
INFO 2026-06-08 07:52:56 MarkDuplicates Tracking 78790 as yet unmatched pairs. 2185 records in RAM.
INFO 2026-06-08 07:52:59 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 3s. Last read position: chr1:158,176,236
INFO 2026-06-08 07:52:59 MarkDuplicates Tracking 81601 as yet unmatched pairs. 2116 records in RAM.
INFO 2026-06-08 07:53:02 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:162,300,625
INFO 2026-06-08 07:53:02 MarkDuplicates Tracking 84545 as yet unmatched pairs. 1972 records in RAM.
INFO 2026-06-08 07:53:08 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 6s. Last read position: chr1:172,532,523
INFO 2026-06-08 07:53:08 MarkDuplicates Tracking 89098 as yet unmatched pairs. 1993 records in RAM.
INFO 2026-06-08 07:53:11 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:181,776,024
INFO 2026-06-08 07:53:11 MarkDuplicates Tracking 93285 as yet unmatched pairs. 1874 records in RAM.
INFO 2026-06-08 07:53:18 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 7s. Last read position: chr1:197,552,946
INFO 2026-06-08 07:53:18 MarkDuplicates Tracking 98468 as yet unmatched pairs. 1603 records in RAM.
INFO 2026-06-08 07:53:20 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:204,423,500
INFO 2026-06-08 07:53:20 MarkDuplicates Tracking 102719 as yet unmatched pairs. 2084 records in RAM.
INFO 2026-06-08 07:53:23 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:205,680,226
INFO 2026-06-08 07:53:23 MarkDuplicates Tracking 106498 as yet unmatched pairs. 2992 records in RAM.
INFO 2026-06-08 07:53:26 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:214,089,947
INFO 2026-06-08 07:53:26 MarkDuplicates Tracking 108663 as yet unmatched pairs. 1125 records in RAM.
INFO 2026-06-08 07:53:28 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:226,360,892
INFO 2026-06-08 07:53:28 MarkDuplicates Tracking 114659 as yet unmatched pairs. 2237 records in RAM.
INFO 2026-06-08 07:53:31 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 3s. Last read position: chr1:232,806,240
INFO 2026-06-08 07:53:31 MarkDuplicates Tracking 117057 as yet unmatched pairs. 693 records in RAM.
INFO 2026-06-08 07:53:34 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:243,695,619
INFO 2026-06-08 07:53:34 MarkDuplicates Tracking 121980 as yet unmatched pairs. 914 records in RAM.
INFO 2026-06-08 07:53:38 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 4s. Last read position: chr2:5,697,414
INFO 2026-06-08 07:53:38 MarkDuplicates Tracking 126808 as yet unmatched pairs. 38353 records in RAM.
INFO 2026-06-08 07:53:41 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:20,801,368
INFO 2026-06-08 07:53:41 MarkDuplicates Tracking 130540 as yet unmatched pairs. 37837 records in RAM.
INFO 2026-06-08 07:53:43 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr2:26,678,083
INFO 2026-06-08 07:53:43 MarkDuplicates Tracking 134102 as yet unmatched pairs. 38683 records in RAM.
INFO 2026-06-08 07:53:46 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:29,920,062
INFO 2026-06-08 07:53:46 MarkDuplicates Tracking 138339 as yet unmatched pairs. 40879 records in RAM.
INFO 2026-06-08 07:53:48 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 07:53:48 MarkDuplicates Tracking 358988 as yet unmatched pairs. 28692 records in RAM.
INFO 2026-06-08 07:53:51 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:42,493,253
INFO 2026-06-08 07:53:51 MarkDuplicates Tracking 382055 as yet unmatched pairs. 27158 records in RAM.
INFO 2026-06-08 07:53:54 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:48,479,987
INFO 2026-06-08 07:53:54 MarkDuplicates Tracking 383458 as yet unmatched pairs. 25942 records in RAM.
INFO 2026-06-08 07:53:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:61,534,670
INFO 2026-06-08 07:53:57 MarkDuplicates Tracking 386831 as yet unmatched pairs. 25230 records in RAM.
INFO 2026-06-08 07:53:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:73,986,014
INFO 2026-06-08 07:53:59 MarkDuplicates Tracking 391189 as yet unmatched pairs. 26066 records in RAM.
INFO 2026-06-08 07:54:02 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 3s. Last read position: chr2:86,153,444
INFO 2026-06-08 07:54:02 MarkDuplicates Tracking 391438 as yet unmatched pairs. 22579 records in RAM.
INFO 2026-06-08 07:54:04 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:95,520,021
INFO 2026-06-08 07:54:04 MarkDuplicates Tracking 393199 as yet unmatched pairs. 21890 records in RAM.
INFO 2026-06-08 07:54:07 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:97,733,327
INFO 2026-06-08 07:54:07 MarkDuplicates Tracking 394734 as yet unmatched pairs. 21708 records in RAM.
INFO 2026-06-08 07:54:10 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 3s. Last read position: chr2:106,441,226
INFO 2026-06-08 07:54:10 MarkDuplicates Tracking 396444 as yet unmatched pairs. 20340 records in RAM.
INFO 2026-06-08 07:54:13 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 3s. Last read position: chr2:110,543,610
INFO 2026-06-08 07:54:13 MarkDuplicates Tracking 396979 as yet unmatched pairs. 19144 records in RAM.
INFO 2026-06-08 07:54:16 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:113,222,668
INFO 2026-06-08 07:54:16 MarkDuplicates Tracking 399711 as yet unmatched pairs. 20189 records in RAM.
INFO 2026-06-08 07:54:18 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:124,123,813
INFO 2026-06-08 07:54:18 MarkDuplicates Tracking 399900 as yet unmatched pairs. 17058 records in RAM.
INFO 2026-06-08 07:54:21 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:131,600,003
INFO 2026-06-08 07:54:21 MarkDuplicates Tracking 401694 as yet unmatched pairs. 16122 records in RAM.
INFO 2026-06-08 07:54:23 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:149,637,883
INFO 2026-06-08 07:54:23 MarkDuplicates Tracking 404756 as yet unmatched pairs. 14417 records in RAM.
INFO 2026-06-08 07:54:25 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:162,318,267
INFO 2026-06-08 07:54:25 MarkDuplicates Tracking 407169 as yet unmatched pairs. 13227 records in RAM.
INFO 2026-06-08 07:54:27 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:172,603,514
INFO 2026-06-08 07:54:27 MarkDuplicates Tracking 411296 as yet unmatched pairs. 13882 records in RAM.
INFO 2026-06-08 07:54:30 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:178,647,090
INFO 2026-06-08 07:54:30 MarkDuplicates Tracking 410840 as yet unmatched pairs. 10639 records in RAM.
INFO 2026-06-08 07:54:33 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:188,997,358
INFO 2026-06-08 07:54:33 MarkDuplicates Tracking 413072 as yet unmatched pairs. 9505 records in RAM.
INFO 2026-06-08 07:54:35 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:200,818,244
INFO 2026-06-08 07:54:35 MarkDuplicates Tracking 415710 as yet unmatched pairs. 8392 records in RAM.
INFO 2026-06-08 07:54:38 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:209,945,930
INFO 2026-06-08 07:54:38 MarkDuplicates Tracking 417226 as yet unmatched pairs. 6824 records in RAM.
INFO 2026-06-08 07:54:41 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:218,890,099
INFO 2026-06-08 07:54:41 MarkDuplicates Tracking 419210 as yet unmatched pairs. 5588 records in RAM.
INFO 2026-06-08 07:54:43 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:222,219,717
INFO 2026-06-08 07:54:43 MarkDuplicates Tracking 421229 as yet unmatched pairs. 5501 records in RAM.
INFO 2026-06-08 07:54:45 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:231,072,341
INFO 2026-06-08 07:54:45 MarkDuplicates Tracking 421333 as yet unmatched pairs. 2570 records in RAM.
INFO 2026-06-08 07:54:48 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:239,049,647
INFO 2026-06-08 07:54:48 MarkDuplicates Tracking 424609 as yet unmatched pairs. 3093 records in RAM.
INFO 2026-06-08 07:54:51 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 3s. Last read position: chr3:762,297
INFO 2026-06-08 07:54:51 MarkDuplicates Tracking 423239 as yet unmatched pairs. 32147 records in RAM.
INFO 2026-06-08 07:54:54 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 3s. Last read position: chr3:12,291,895
INFO 2026-06-08 07:54:54 MarkDuplicates Tracking 426077 as yet unmatched pairs. 31822 records in RAM.
INFO 2026-06-08 07:54:58 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 3s. Last read position: chr3:12,343,726
INFO 2026-06-08 07:54:58 MarkDuplicates Tracking 426452 as yet unmatched pairs. 30307 records in RAM.
INFO 2026-06-08 07:55:01 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 3s. Last read position: chr3:12,604,213
INFO 2026-06-08 07:55:01 MarkDuplicates Tracking 427540 as yet unmatched pairs. 29589 records in RAM.
INFO 2026-06-08 07:55:04 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr3:28,959,976
INFO 2026-06-08 07:55:04 MarkDuplicates Tracking 428820 as yet unmatched pairs. 26863 records in RAM.
INFO 2026-06-08 07:55:06 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr3:38,771,096
INFO 2026-06-08 07:55:06 MarkDuplicates Tracking 430416 as yet unmatched pairs. 25450 records in RAM.
INFO 2026-06-08 07:55:09 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr3:46,459,792
INFO 2026-06-08 07:55:09 MarkDuplicates Tracking 431792 as yet unmatched pairs. 24147 records in RAM.
INFO 2026-06-08 07:55:12 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr3:49,163,932
INFO 2026-06-08 07:55:12 MarkDuplicates Tracking 432457 as yet unmatched pairs. 23047 records in RAM.
INFO 2026-06-08 07:55:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 3s. Last read position: chr3:51,959,243
INFO 2026-06-08 07:55:15 MarkDuplicates Tracking 432908 as yet unmatched pairs. 21915 records in RAM.
INFO 2026-06-08 07:55:18 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:56,754,928
INFO 2026-06-08 07:55:18 MarkDuplicates Tracking 433642 as yet unmatched pairs. 20478 records in RAM.
INFO 2026-06-08 07:55:20 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr3:69,968,188
INFO 2026-06-08 07:55:20 MarkDuplicates Tracking 436835 as yet unmatched pairs. 19958 records in RAM.
INFO 2026-06-08 07:55:23 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:89,419,187
INFO 2026-06-08 07:55:23 MarkDuplicates Tracking 439257 as yet unmatched pairs. 17447 records in RAM.
INFO 2026-06-08 07:55:25 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:111,112,057
INFO 2026-06-08 07:55:25 MarkDuplicates Tracking 441387 as yet unmatched pairs. 14698 records in RAM.
INFO 2026-06-08 07:55:28 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:121,667,995
INFO 2026-06-08 07:55:28 MarkDuplicates Tracking 442822 as yet unmatched pairs. 12936 records in RAM.
INFO 2026-06-08 07:55:31 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr3:129,001,792
INFO 2026-06-08 07:55:31 MarkDuplicates Tracking 443901 as yet unmatched pairs. 11580 records in RAM.
INFO 2026-06-08 07:55:33 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr3:136,337,315
INFO 2026-06-08 07:55:33 MarkDuplicates Tracking 446632 as yet unmatched pairs. 11651 records in RAM.
INFO 2026-06-08 07:55:36 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:147,095,866
INFO 2026-06-08 07:55:36 MarkDuplicates Tracking 446566 as yet unmatched pairs. 8335 records in RAM.
INFO 2026-06-08 07:55:39 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 3s. Last read position: chr3:165,017,729
INFO 2026-06-08 07:55:39 MarkDuplicates Tracking 449171 as yet unmatched pairs. 6619 records in RAM.
INFO 2026-06-08 07:55:42 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:180,949,228
INFO 2026-06-08 07:55:42 MarkDuplicates Tracking 451133 as yet unmatched pairs. 4508 records in RAM.
INFO 2026-06-08 07:55:46 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 3s. Last read position: chr3:185,483,000
INFO 2026-06-08 07:55:46 MarkDuplicates Tracking 453742 as yet unmatched pairs. 4965 records in RAM.
INFO 2026-06-08 07:55:49 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr3:189,897,100
INFO 2026-06-08 07:55:49 MarkDuplicates Tracking 453714 as yet unmatched pairs. 2504 records in RAM.
INFO 2026-06-08 07:55:52 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 3s. Last read position: chr4:653,797
INFO 2026-06-08 07:55:52 MarkDuplicates Tracking 453980 as yet unmatched pairs. 26727 records in RAM.
INFO 2026-06-08 07:55:55 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr4:2,947,490
INFO 2026-06-08 07:55:55 MarkDuplicates Tracking 453959 as yet unmatched pairs. 25246 records in RAM.
INFO 2026-06-08 07:55:56 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:9,243,840
INFO 2026-06-08 07:55:56 MarkDuplicates Tracking 455059 as yet unmatched pairs. 24353 records in RAM.
INFO 2026-06-08 07:55:58 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:20,539,626
INFO 2026-06-08 07:55:58 MarkDuplicates Tracking 456014 as yet unmatched pairs. 22470 records in RAM.
INFO 2026-06-08 07:56:00 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:40,436,211
INFO 2026-06-08 07:56:00 MarkDuplicates Tracking 458360 as yet unmatched pairs. 20194 records in RAM.
INFO 2026-06-08 07:56:02 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr4:54,297,229
INFO 2026-06-08 07:56:02 MarkDuplicates Tracking 462003 as yet unmatched pairs. 20456 records in RAM.
INFO 2026-06-08 07:56:05 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr4:67,825,709
INFO 2026-06-08 07:56:05 MarkDuplicates Tracking 461640 as yet unmatched pairs. 16559 records in RAM.
INFO 2026-06-08 07:56:07 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:78,586,296
INFO 2026-06-08 07:56:07 MarkDuplicates Tracking 463080 as yet unmatched pairs. 14955 records in RAM.
INFO 2026-06-08 07:56:10 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 3s. Last read position: chr4:93,559,414
INFO 2026-06-08 07:56:10 MarkDuplicates Tracking 464600 as yet unmatched pairs. 12785 records in RAM.
INFO 2026-06-08 07:56:13 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 3s. Last read position: chr4:107,644,927
INFO 2026-06-08 07:56:13 MarkDuplicates Tracking 466266 as yet unmatched pairs. 10958 records in RAM.
INFO 2026-06-08 07:56:16 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 2s. Last read position: chr4:122,897,593
INFO 2026-06-08 07:56:16 MarkDuplicates Tracking 468970 as yet unmatched pairs. 9855 records in RAM.
INFO 2026-06-08 07:56:18 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr4:144,714,307
INFO 2026-06-08 07:56:18 MarkDuplicates Tracking 470200 as yet unmatched pairs. 6300 records in RAM.
INFO 2026-06-08 07:56:21 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr4:161,385,705
INFO 2026-06-08 07:56:21 MarkDuplicates Tracking 471619 as yet unmatched pairs. 3955 records in RAM.
INFO 2026-06-08 07:56:23 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:185,508,369
INFO 2026-06-08 07:56:23 MarkDuplicates Tracking 473674 as yet unmatched pairs. 1097 records in RAM.
INFO 2026-06-08 07:56:26 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr5:1,294,378
INFO 2026-06-08 07:56:26 MarkDuplicates Tracking 475392 as yet unmatched pairs. 32506 records in RAM.
INFO 2026-06-08 07:56:29 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr5:29,488,743
INFO 2026-06-08 07:56:29 MarkDuplicates Tracking 476449 as yet unmatched pairs. 28260 records in RAM.
INFO 2026-06-08 07:56:31 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr5:39,383,136
INFO 2026-06-08 07:56:31 MarkDuplicates Tracking 477530 as yet unmatched pairs. 26575 records in RAM.
INFO 2026-06-08 07:56:34 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr5:56,894,363
INFO 2026-06-08 07:56:34 MarkDuplicates Tracking 480875 as yet unmatched pairs. 25847 records in RAM.
INFO 2026-06-08 07:56:36 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:69,592,201
INFO 2026-06-08 07:56:36 MarkDuplicates Tracking 480231 as yet unmatched pairs. 22046 records in RAM.
INFO 2026-06-08 07:56:39 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr5:79,306,443
INFO 2026-06-08 07:56:39 MarkDuplicates Tracking 481095 as yet unmatched pairs. 20485 records in RAM.
INFO 2026-06-08 07:56:41 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:95,780,374
INFO 2026-06-08 07:56:41 MarkDuplicates Tracking 482522 as yet unmatched pairs. 18268 records in RAM.
INFO 2026-06-08 07:56:44 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr5:115,524,835
INFO 2026-06-08 07:56:44 MarkDuplicates Tracking 484208 as yet unmatched pairs. 15580 records in RAM.
INFO 2026-06-08 07:56:47 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:132,496,409
INFO 2026-06-08 07:56:47 MarkDuplicates Tracking 485580 as yet unmatched pairs. 13304 records in RAM.
INFO 2026-06-08 07:56:49 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr5:140,042,861
INFO 2026-06-08 07:56:49 MarkDuplicates Tracking 485947 as yet unmatched pairs. 11417 records in RAM.
INFO 2026-06-08 07:56:52 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr5:142,314,989
INFO 2026-06-08 07:56:52 MarkDuplicates Tracking 485635 as yet unmatched pairs. 9755 records in RAM.
INFO 2026-06-08 07:56:55 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr5:150,155,642
INFO 2026-06-08 07:56:55 MarkDuplicates Tracking 487963 as yet unmatched pairs. 9763 records in RAM.
INFO 2026-06-08 07:56:58 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:160,589,395
INFO 2026-06-08 07:56:58 MarkDuplicates Tracking 485887 as yet unmatched pairs. 5108 records in RAM.
INFO 2026-06-08 07:57:00 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr5:176,889,835
INFO 2026-06-08 07:57:00 MarkDuplicates Tracking 486802 as yet unmatched pairs. 2459 records in RAM.
INFO 2026-06-08 07:57:03 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:179,878,078
INFO 2026-06-08 07:57:03 MarkDuplicates Tracking 486427 as yet unmatched pairs. 665 records in RAM.
INFO 2026-06-08 07:57:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 3s. Last read position: chr6:7,579,945
INFO 2026-06-08 07:57:06 MarkDuplicates Tracking 486970 as yet unmatched pairs. 38848 records in RAM.
INFO 2026-06-08 07:57:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr6:26,017,367
INFO 2026-06-08 07:57:08 MarkDuplicates Tracking 487938 as yet unmatched pairs. 36336 records in RAM.
INFO 2026-06-08 07:57:11 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 3s. Last read position: chr6:29,946,392
INFO 2026-06-08 07:57:11 MarkDuplicates Tracking 488532 as yet unmatched pairs. 35476 records in RAM.
INFO 2026-06-08 07:57:14 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr6:31,828,005
INFO 2026-06-08 07:57:14 MarkDuplicates Tracking 487739 as yet unmatched pairs. 33507 records in RAM.
INFO 2026-06-08 07:57:17 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 3s. Last read position: chr6:32,643,114
INFO 2026-06-08 07:57:17 MarkDuplicates Tracking 487998 as yet unmatched pairs. 32810 records in RAM.
INFO 2026-06-08 07:57:20 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr6:35,452,467
INFO 2026-06-08 07:57:20 MarkDuplicates Tracking 488148 as yet unmatched pairs. 31629 records in RAM.
INFO 2026-06-08 07:57:23 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 3s. Last read position: chr6:41,941,319
INFO 2026-06-08 07:57:23 MarkDuplicates Tracking 488099 as yet unmatched pairs. 29887 records in RAM.
INFO 2026-06-08 07:57:26 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 3s. Last read position: chr6:46,928,973
INFO 2026-06-08 07:57:26 MarkDuplicates Tracking 486243 as yet unmatched pairs. 26448 records in RAM.
INFO 2026-06-08 07:57:29 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 3s. Last read position: chr6:65,353,514
INFO 2026-06-08 07:57:29 MarkDuplicates Tracking 487353 as yet unmatched pairs. 24006 records in RAM.
INFO 2026-06-08 07:57:33 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 3s. Last read position: chr6:85,549,707
INFO 2026-06-08 07:57:33 MarkDuplicates Tracking 488282 as yet unmatched pairs. 21128 records in RAM.
INFO 2026-06-08 07:57:36 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 3s. Last read position: chr6:99,609,187
INFO 2026-06-08 07:57:36 MarkDuplicates Tracking 488637 as yet unmatched pairs. 18487 records in RAM.
INFO 2026-06-08 07:57:38 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr6:113,550,462
INFO 2026-06-08 07:57:38 MarkDuplicates Tracking 488961 as yet unmatched pairs. 15747 records in RAM.
INFO 2026-06-08 07:57:41 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr6:117,694,192
INFO 2026-06-08 07:57:41 MarkDuplicates Tracking 488895 as yet unmatched pairs. 13978 records in RAM.
INFO 2026-06-08 07:57:44 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr6:129,157,336
INFO 2026-06-08 07:57:44 MarkDuplicates Tracking 489986 as yet unmatched pairs. 12379 records in RAM.
INFO 2026-06-08 07:57:46 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:137,197,500
INFO 2026-06-08 07:57:46 MarkDuplicates Tracking 490133 as yet unmatched pairs. 10309 records in RAM.
INFO 2026-06-08 07:57:49 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr6:149,604,557
INFO 2026-06-08 07:57:49 MarkDuplicates Tracking 489270 as yet unmatched pairs. 6687 records in RAM.
INFO 2026-06-08 07:57:51 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr6:154,430,276
INFO 2026-06-08 07:57:51 MarkDuplicates Tracking 488951 as yet unmatched pairs. 4579 records in RAM.
INFO 2026-06-08 07:57:54 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr6:160,633,697
INFO 2026-06-08 07:57:54 MarkDuplicates Tracking 489075 as yet unmatched pairs. 2761 records in RAM.
INFO 2026-06-08 07:57:55 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:170,639,548
INFO 2026-06-08 07:57:55 MarkDuplicates Tracking 489359 as yet unmatched pairs. 584 records in RAM.
INFO 2026-06-08 07:57:58 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 3s. Last read position: chr7:5,977,731
INFO 2026-06-08 07:57:58 MarkDuplicates Tracking 488834 as yet unmatched pairs. 41903 records in RAM.
INFO 2026-06-08 07:58:01 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr7:13,923,263
INFO 2026-06-08 07:58:01 MarkDuplicates Tracking 489651 as yet unmatched pairs. 40822 records in RAM.
INFO 2026-06-08 07:58:04 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr7:13,988,229
INFO 2026-06-08 07:58:04 MarkDuplicates Tracking 489546 as yet unmatched pairs. 39458 records in RAM.
INFO 2026-06-08 07:58:07 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 3s. Last read position: chr7:31,520,367
INFO 2026-06-08 07:58:07 MarkDuplicates Tracking 488174 as yet unmatched pairs. 35001 records in RAM.
INFO 2026-06-08 07:58:10 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 3s. Last read position: chr7:44,696,873
INFO 2026-06-08 07:58:10 MarkDuplicates Tracking 488328 as yet unmatched pairs. 32624 records in RAM.
INFO 2026-06-08 07:58:13 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr7:55,166,988
INFO 2026-06-08 07:58:13 MarkDuplicates Tracking 490587 as yet unmatched pairs. 32648 records in RAM.
INFO 2026-06-08 07:58:16 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr7:56,366,159
INFO 2026-06-08 07:58:16 MarkDuplicates Tracking 487378 as yet unmatched pairs. 28046 records in RAM.
INFO 2026-06-08 07:58:18 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:73,266,286
INFO 2026-06-08 07:58:18 MarkDuplicates Tracking 487563 as yet unmatched pairs. 25937 records in RAM.
INFO 2026-06-08 07:58:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr7:76,285,757
INFO 2026-06-08 07:58:20 MarkDuplicates Tracking 487295 as yet unmatched pairs. 24833 records in RAM.
INFO 2026-06-08 07:58:22 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:87,194,037
INFO 2026-06-08 07:58:22 MarkDuplicates Tracking 487002 as yet unmatched pairs. 22311 records in RAM.
INFO 2026-06-08 07:58:24 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:97,006,039
INFO 2026-06-08 07:58:24 MarkDuplicates Tracking 486941 as yet unmatched pairs. 20036 records in RAM.
INFO 2026-06-08 07:58:26 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr7:100,995,122
INFO 2026-06-08 07:58:26 MarkDuplicates Tracking 486518 as yet unmatched pairs. 18281 records in RAM.
INFO 2026-06-08 07:58:29 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr7:102,556,015
INFO 2026-06-08 07:58:29 MarkDuplicates Tracking 485561 as yet unmatched pairs. 16335 records in RAM.
INFO 2026-06-08 07:58:31 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr7:108,180,181
INFO 2026-06-08 07:58:31 MarkDuplicates Tracking 485292 as yet unmatched pairs. 14426 records in RAM.
INFO 2026-06-08 07:58:34 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr7:124,822,377
INFO 2026-06-08 07:58:34 MarkDuplicates Tracking 486672 as yet unmatched pairs. 12711 records in RAM.
INFO 2026-06-08 07:58:36 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr7:132,508,399
INFO 2026-06-08 07:58:36 MarkDuplicates Tracking 484952 as yet unmatched pairs. 9161 records in RAM.
INFO 2026-06-08 07:58:39 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr7:140,791,430
INFO 2026-06-08 07:58:39 MarkDuplicates Tracking 485926 as yet unmatched pairs. 8027 records in RAM.
INFO 2026-06-08 07:58:41 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr7:144,318,419
INFO 2026-06-08 07:58:41 MarkDuplicates Tracking 484242 as yet unmatched pairs. 5037 records in RAM.
INFO 2026-06-08 07:58:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr7:151,967,220
INFO 2026-06-08 07:58:43 MarkDuplicates Tracking 483214 as yet unmatched pairs. 2340 records in RAM.
INFO 2026-06-08 07:58:46 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr8:1,909,271
INFO 2026-06-08 07:58:46 MarkDuplicates Tracking 482849 as yet unmatched pairs. 41270 records in RAM.
INFO 2026-06-08 07:58:49 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr8:7,581,340
INFO 2026-06-08 07:58:49 MarkDuplicates Tracking 482862 as yet unmatched pairs. 40272 records in RAM.
INFO 2026-06-08 07:58:51 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr8:11,750,199
INFO 2026-06-08 07:58:51 MarkDuplicates Tracking 482486 as yet unmatched pairs. 39038 records in RAM.
INFO 2026-06-08 07:58:53 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr8:23,137,897
INFO 2026-06-08 07:58:53 MarkDuplicates Tracking 481445 as yet unmatched pairs. 35968 records in RAM.
INFO 2026-06-08 07:58:56 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr8:31,539,686
INFO 2026-06-08 07:58:56 MarkDuplicates Tracking 480807 as yet unmatched pairs. 33452 records in RAM.
INFO 2026-06-08 07:58:58 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr8:32,657,948
INFO 2026-06-08 07:58:58 MarkDuplicates Tracking 481681 as yet unmatched pairs. 33057 records in RAM.
INFO 2026-06-08 07:59:00 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr8:32,719,351
INFO 2026-06-08 07:59:00 MarkDuplicates Tracking 480564 as yet unmatched pairs. 30831 records in RAM.
INFO 2026-06-08 07:59:03 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr8:33,372,558
INFO 2026-06-08 07:59:03 MarkDuplicates Tracking 478495 as yet unmatched pairs. 27599 records in RAM.
INFO 2026-06-08 07:59:05 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr8:38,429,316
INFO 2026-06-08 07:59:05 MarkDuplicates Tracking 479584 as yet unmatched pairs. 27259 records in RAM.
INFO 2026-06-08 07:59:07 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr8:41,931,306
INFO 2026-06-08 07:59:07 MarkDuplicates Tracking 478403 as yet unmatched pairs. 24744 records in RAM.
INFO 2026-06-08 07:59:10 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr8:54,458,017
INFO 2026-06-08 07:59:10 MarkDuplicates Tracking 477699 as yet unmatched pairs. 21924 records in RAM.
INFO 2026-06-08 07:59:13 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr8:69,128,322
INFO 2026-06-08 07:59:13 MarkDuplicates Tracking 475329 as yet unmatched pairs. 17043 records in RAM.
INFO 2026-06-08 07:59:15 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr8:89,953,651
INFO 2026-06-08 07:59:15 MarkDuplicates Tracking 475198 as yet unmatched pairs. 13612 records in RAM.
INFO 2026-06-08 07:59:18 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr8:102,551,228
INFO 2026-06-08 07:59:18 MarkDuplicates Tracking 474094 as yet unmatched pairs. 10244 records in RAM.
INFO 2026-06-08 07:59:21 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr8:124,039,843
INFO 2026-06-08 07:59:21 MarkDuplicates Tracking 473579 as yet unmatched pairs. 6486 records in RAM.
INFO 2026-06-08 07:59:24 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr8:141,478,698
INFO 2026-06-08 07:59:24 MarkDuplicates Tracking 472822 as yet unmatched pairs. 2958 records in RAM.
INFO 2026-06-08 07:59:26 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr8:144,392,306
INFO 2026-06-08 07:59:26 MarkDuplicates Tracking 471934 as yet unmatched pairs. 1171 records in RAM.
INFO 2026-06-08 07:59:29 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr9:2,810,345
INFO 2026-06-08 07:59:29 MarkDuplicates Tracking 470660 as yet unmatched pairs. 42160 records in RAM.
INFO 2026-06-08 07:59:32 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr9:14,848,503
INFO 2026-06-08 07:59:32 MarkDuplicates Tracking 469730 as yet unmatched pairs. 39200 records in RAM.
INFO 2026-06-08 07:59:34 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr9:26,077,331
INFO 2026-06-08 07:59:34 MarkDuplicates Tracking 468901 as yet unmatched pairs. 36358 records in RAM.
INFO 2026-06-08 07:59:37 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 2s. Last read position: chr9:35,683,966
INFO 2026-06-08 07:59:37 MarkDuplicates Tracking 467822 as yet unmatched pairs. 33514 records in RAM.
INFO 2026-06-08 07:59:39 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr9:40,223,561
INFO 2026-06-08 07:59:39 MarkDuplicates Tracking 467599 as yet unmatched pairs. 32173 records in RAM.
INFO 2026-06-08 07:59:41 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr9:61,193,012
INFO 2026-06-08 07:59:41 MarkDuplicates Tracking 467314 as yet unmatched pairs. 31033 records in RAM.
INFO 2026-06-08 07:59:42 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr9:66,148,971
INFO 2026-06-08 07:59:42 MarkDuplicates Tracking 466775 as yet unmatched pairs. 29795 records in RAM.
INFO 2026-06-08 07:59:44 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr9:77,717,681
INFO 2026-06-08 07:59:44 MarkDuplicates Tracking 466528 as yet unmatched pairs. 27886 records in RAM.
INFO 2026-06-08 07:59:46 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr9:84,740,671
INFO 2026-06-08 07:59:46 MarkDuplicates Tracking 466076 as yet unmatched pairs. 25918 records in RAM.
INFO 2026-06-08 07:59:49 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr9:84,896,443
INFO 2026-06-08 07:59:49 MarkDuplicates Tracking 465130 as yet unmatched pairs. 24045 records in RAM.
INFO 2026-06-08 07:59:51 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr9:85,996,463
INFO 2026-06-08 07:59:51 MarkDuplicates Tracking 462019 as yet unmatched pairs. 19846 records in RAM.
INFO 2026-06-08 07:59:53 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr9:95,111,362
INFO 2026-06-08 07:59:53 MarkDuplicates Tracking 463172 as yet unmatched pairs. 19300 records in RAM.
INFO 2026-06-08 07:59:56 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr9:101,425,404
INFO 2026-06-08 07:59:56 MarkDuplicates Tracking 460038 as yet unmatched pairs. 14744 records in RAM.
INFO 2026-06-08 07:59:58 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr9:114,097,345
INFO 2026-06-08 07:59:58 MarkDuplicates Tracking 459286 as yet unmatched pairs. 11924 records in RAM.
INFO 2026-06-08 08:00:00 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr9:126,833,512
INFO 2026-06-08 08:00:00 MarkDuplicates Tracking 457852 as yet unmatched pairs. 8558 records in RAM.
INFO 2026-06-08 08:00:02 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr9:130,713,335
INFO 2026-06-08 08:00:02 MarkDuplicates Tracking 459432 as yet unmatched pairs. 9023 records in RAM.
INFO 2026-06-08 08:00:04 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr9:133,554,535
INFO 2026-06-08 08:00:04 MarkDuplicates Tracking 455560 as yet unmatched pairs. 4167 records in RAM.
INFO 2026-06-08 08:00:07 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr9:136,511,137
INFO 2026-06-08 08:00:07 MarkDuplicates Tracking 455137 as yet unmatched pairs. 2838 records in RAM.
INFO 2026-06-08 08:00:10 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr10:85,541
INFO 2026-06-08 08:00:10 MarkDuplicates Tracking 453113 as yet unmatched pairs. 40376 records in RAM.
INFO 2026-06-08 08:00:12 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr10:17,113,989
INFO 2026-06-08 08:00:12 MarkDuplicates Tracking 451800 as yet unmatched pairs. 36885 records in RAM.
INFO 2026-06-08 08:00:15 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr10:32,010,956
INFO 2026-06-08 08:00:15 MarkDuplicates Tracking 451700 as yet unmatched pairs. 34778 records in RAM.
INFO 2026-06-08 08:00:17 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr10:43,117,591
INFO 2026-06-08 08:00:17 MarkDuplicates Tracking 451295 as yet unmatched pairs. 32719 records in RAM.
INFO 2026-06-08 08:00:20 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr10:47,754,102
INFO 2026-06-08 08:00:20 MarkDuplicates Tracking 448258 as yet unmatched pairs. 28672 records in RAM.
INFO 2026-06-08 08:00:23 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr10:62,092,355
INFO 2026-06-08 08:00:23 MarkDuplicates Tracking 447842 as yet unmatched pairs. 26315 records in RAM.
INFO 2026-06-08 08:00:26 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 3s. Last read position: chr10:71,784,919
INFO 2026-06-08 08:00:26 MarkDuplicates Tracking 445243 as yet unmatched pairs. 22054 records in RAM.
INFO 2026-06-08 08:00:29 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr10:84,260,116
INFO 2026-06-08 08:00:29 MarkDuplicates Tracking 443588 as yet unmatched pairs. 18708 records in RAM.
INFO 2026-06-08 08:00:32 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr10:89,022,882
INFO 2026-06-08 08:00:32 MarkDuplicates Tracking 444217 as yet unmatched pairs. 18183 records in RAM.
INFO 2026-06-08 08:00:34 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr10:97,390,401
INFO 2026-06-08 08:00:34 MarkDuplicates Tracking 440840 as yet unmatched pairs. 13393 records in RAM.
INFO 2026-06-08 08:00:37 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr10:102,617,902
INFO 2026-06-08 08:00:37 MarkDuplicates Tracking 441003 as yet unmatched pairs. 12515 records in RAM.
INFO 2026-06-08 08:00:39 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr10:113,697,661
INFO 2026-06-08 08:00:39 MarkDuplicates Tracking 437890 as yet unmatched pairs. 7638 records in RAM.
INFO 2026-06-08 08:00:42 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr10:121,575,178
INFO 2026-06-08 08:00:42 MarkDuplicates Tracking 438438 as yet unmatched pairs. 6687 records in RAM.
INFO 2026-06-08 08:00:44 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr10:124,449,828
INFO 2026-06-08 08:00:44 MarkDuplicates Tracking 435153 as yet unmatched pairs. 2568 records in RAM.
INFO 2026-06-08 08:00:46 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr11:555,693
INFO 2026-06-08 08:00:46 MarkDuplicates Tracking 433721 as yet unmatched pairs. 48637 records in RAM.
INFO 2026-06-08 08:00:49 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr11:2,138,150
INFO 2026-06-08 08:00:49 MarkDuplicates Tracking 432736 as yet unmatched pairs. 47062 records in RAM.
INFO 2026-06-08 08:00:51 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr11:7,058,296
INFO 2026-06-08 08:00:51 MarkDuplicates Tracking 430889 as yet unmatched pairs. 44335 records in RAM.
INFO 2026-06-08 08:00:53 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr11:17,591,273
INFO 2026-06-08 08:00:53 MarkDuplicates Tracking 429225 as yet unmatched pairs. 41236 records in RAM.
INFO 2026-06-08 08:00:56 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr11:32,614,788
INFO 2026-06-08 08:00:56 MarkDuplicates Tracking 427407 as yet unmatched pairs. 37506 records in RAM.
INFO 2026-06-08 08:00:58 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr11:47,343,004
INFO 2026-06-08 08:00:58 MarkDuplicates Tracking 425809 as yet unmatched pairs. 34088 records in RAM.
INFO 2026-06-08 08:01:00 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr11:59,212,609
INFO 2026-06-08 08:01:00 MarkDuplicates Tracking 424466 as yet unmatched pairs. 31415 records in RAM.
INFO 2026-06-08 08:01:03 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr11:62,909,883
INFO 2026-06-08 08:01:03 MarkDuplicates Tracking 423138 as yet unmatched pairs. 29304 records in RAM.
INFO 2026-06-08 08:01:05 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr11:65,543,425
INFO 2026-06-08 08:01:05 MarkDuplicates Tracking 421497 as yet unmatched pairs. 26947 records in RAM.
INFO 2026-06-08 08:01:08 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr11:68,158,411
INFO 2026-06-08 08:01:08 MarkDuplicates Tracking 419986 as yet unmatched pairs. 24749 records in RAM.
INFO 2026-06-08 08:01:10 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr11:74,100,568
INFO 2026-06-08 08:01:10 MarkDuplicates Tracking 418260 as yet unmatched pairs. 22030 records in RAM.
INFO 2026-06-08 08:01:13 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr11:86,278,092
INFO 2026-06-08 08:01:13 MarkDuplicates Tracking 417180 as yet unmatched pairs. 19276 records in RAM.
INFO 2026-06-08 08:01:15 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr11:100,193,538
INFO 2026-06-08 08:01:15 MarkDuplicates Tracking 414709 as yet unmatched pairs. 15037 records in RAM.
INFO 2026-06-08 08:01:18 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr11:108,224,139
INFO 2026-06-08 08:01:18 MarkDuplicates Tracking 414356 as yet unmatched pairs. 13249 records in RAM.
INFO 2026-06-08 08:01:20 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr11:117,179,227
INFO 2026-06-08 08:01:20 MarkDuplicates Tracking 411331 as yet unmatched pairs. 8814 records in RAM.
INFO 2026-06-08 08:01:23 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr11:119,173,521
INFO 2026-06-08 08:01:23 MarkDuplicates Tracking 409645 as yet unmatched pairs. 6335 records in RAM.
INFO 2026-06-08 08:01:26 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 3s. Last read position: chr11:125,625,437
INFO 2026-06-08 08:01:26 MarkDuplicates Tracking 407514 as yet unmatched pairs. 3056 records in RAM.
INFO 2026-06-08 08:01:30 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 3s. Last read position: chr12:284,609
INFO 2026-06-08 08:01:30 MarkDuplicates Tracking 407342 as yet unmatched pairs. 57851 records in RAM.
INFO 2026-06-08 08:01:33 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr12:6,453,658
INFO 2026-06-08 08:01:33 MarkDuplicates Tracking 403933 as yet unmatched pairs. 53528 records in RAM.
INFO 2026-06-08 08:01:35 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr12:10,806,931
INFO 2026-06-08 08:01:35 MarkDuplicates Tracking 402395 as yet unmatched pairs. 51195 records in RAM.
INFO 2026-06-08 08:01:38 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr12:11,788,124
INFO 2026-06-08 08:01:38 MarkDuplicates Tracking 402465 as yet unmatched pairs. 50594 records in RAM.
INFO 2026-06-08 08:01:41 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr12:11,830,848
INFO 2026-06-08 08:01:41 MarkDuplicates Tracking 400859 as yet unmatched pairs. 48297 records in RAM.
INFO 2026-06-08 08:01:43 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr12:11,895,185
INFO 2026-06-08 08:01:43 MarkDuplicates Tracking 399015 as yet unmatched pairs. 45758 records in RAM.
INFO 2026-06-08 08:01:46 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr12:25,205,632
INFO 2026-06-08 08:01:46 MarkDuplicates Tracking 396608 as yet unmatched pairs. 41881 records in RAM.
INFO 2026-06-08 08:01:48 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr12:40,560,981
INFO 2026-06-08 08:01:48 MarkDuplicates Tracking 392957 as yet unmatched pairs. 36838 records in RAM.
INFO 2026-06-08 08:01:51 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr12:49,022,240
INFO 2026-06-08 08:01:51 MarkDuplicates Tracking 391921 as yet unmatched pairs. 34687 records in RAM.
INFO 2026-06-08 08:01:54 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr12:51,346,511
INFO 2026-06-08 08:01:54 MarkDuplicates Tracking 389201 as yet unmatched pairs. 31369 records in RAM.
INFO 2026-06-08 08:01:57 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr12:54,340,766
INFO 2026-06-08 08:01:57 MarkDuplicates Tracking 387546 as yet unmatched pairs. 29038 records in RAM.
INFO 2026-06-08 08:02:00 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 3s. Last read position: chr12:57,096,284
INFO 2026-06-08 08:02:00 MarkDuplicates Tracking 388277 as yet unmatched pairs. 29145 records in RAM.
INFO 2026-06-08 08:02:03 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 3s. Last read position: chr12:64,312,580
INFO 2026-06-08 08:02:03 MarkDuplicates Tracking 383851 as yet unmatched pairs. 23712 records in RAM.
INFO 2026-06-08 08:02:05 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr12:77,029,988
INFO 2026-06-08 08:02:05 MarkDuplicates Tracking 381345 as yet unmatched pairs. 19729 records in RAM.
INFO 2026-06-08 08:02:08 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr12:96,951,419
INFO 2026-06-08 08:02:08 MarkDuplicates Tracking 378318 as yet unmatched pairs. 14680 records in RAM.
INFO 2026-06-08 08:02:11 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 3s. Last read position: chr12:107,756,838
INFO 2026-06-08 08:02:11 MarkDuplicates Tracking 376139 as yet unmatched pairs. 11184 records in RAM.
INFO 2026-06-08 08:02:14 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 3s. Last read position: chr12:113,093,611
INFO 2026-06-08 08:02:14 MarkDuplicates Tracking 374720 as yet unmatched pairs. 8952 records in RAM.
INFO 2026-06-08 08:02:17 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr12:121,007,420
INFO 2026-06-08 08:02:17 MarkDuplicates Tracking 371939 as yet unmatched pairs. 5182 records in RAM.
INFO 2026-06-08 08:02:20 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr12:130,217,885
INFO 2026-06-08 08:02:20 MarkDuplicates Tracking 369614 as yet unmatched pairs. 1731 records in RAM.
INFO 2026-06-08 08:02:23 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 3s. Last read position: chr13:20,983,456
INFO 2026-06-08 08:02:23 MarkDuplicates Tracking 368814 as yet unmatched pairs. 27913 records in RAM.
INFO 2026-06-08 08:02:26 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr13:28,388,227
INFO 2026-06-08 08:02:26 MarkDuplicates Tracking 367634 as yet unmatched pairs. 25694 records in RAM.
INFO 2026-06-08 08:02:29 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr13:40,555,373
INFO 2026-06-08 08:02:29 MarkDuplicates Tracking 362771 as yet unmatched pairs. 19479 records in RAM.
INFO 2026-06-08 08:02:32 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 3s. Last read position: chr13:51,967,107
INFO 2026-06-08 08:02:32 MarkDuplicates Tracking 360231 as yet unmatched pairs. 15669 records in RAM.
INFO 2026-06-08 08:02:35 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr13:77,090,374
INFO 2026-06-08 08:02:35 MarkDuplicates Tracking 356914 as yet unmatched pairs. 10134 records in RAM.
INFO 2026-06-08 08:02:38 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 3s. Last read position: chr13:101,916,472
INFO 2026-06-08 08:02:38 MarkDuplicates Tracking 354686 as yet unmatched pairs. 5714 records in RAM.
INFO 2026-06-08 08:02:41 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr13:113,799,653
INFO 2026-06-08 08:02:41 MarkDuplicates Tracking 350455 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:02:43 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr14:22,987,195
INFO 2026-06-08 08:02:43 MarkDuplicates Tracking 348598 as yet unmatched pairs. 28149 records in RAM.
INFO 2026-06-08 08:02:46 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr14:33,747,012
INFO 2026-06-08 08:02:46 MarkDuplicates Tracking 346050 as yet unmatched pairs. 24502 records in RAM.
INFO 2026-06-08 08:02:49 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr14:49,674,329
INFO 2026-06-08 08:02:49 MarkDuplicates Tracking 342713 as yet unmatched pairs. 19766 records in RAM.
INFO 2026-06-08 08:02:51 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr14:64,728,957
INFO 2026-06-08 08:02:51 MarkDuplicates Tracking 339854 as yet unmatched pairs. 15567 records in RAM.
INFO 2026-06-08 08:02:54 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr14:74,664,883
INFO 2026-06-08 08:02:54 MarkDuplicates Tracking 337223 as yet unmatched pairs. 11927 records in RAM.
INFO 2026-06-08 08:02:57 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr14:91,313,679
INFO 2026-06-08 08:02:57 MarkDuplicates Tracking 333938 as yet unmatched pairs. 7266 records in RAM.
INFO 2026-06-08 08:02:59 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr14:101,677,960
INFO 2026-06-08 08:02:59 MarkDuplicates Tracking 331138 as yet unmatched pairs. 3346 records in RAM.
INFO 2026-06-08 08:04:11 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 71s. Last read position: chr14:105,142,656
INFO 2026-06-08 08:04:11 MarkDuplicates Tracking 329032 as yet unmatched pairs. 697 records in RAM.
INFO 2026-06-08 08:04:13 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr15:23,136,457
INFO 2026-06-08 08:04:13 MarkDuplicates Tracking 328389 as yet unmatched pairs. 49520 records in RAM.
INFO 2026-06-08 08:04:16 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr15:30,141,281
INFO 2026-06-08 08:04:16 MarkDuplicates Tracking 325697 as yet unmatched pairs. 46274 records in RAM.
INFO 2026-06-08 08:04:17 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr15:34,348,084
INFO 2026-06-08 08:04:17 MarkDuplicates Tracking 324508 as yet unmatched pairs. 44580 records in RAM.
INFO 2026-06-08 08:04:20 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr15:41,696,706
INFO 2026-06-08 08:04:20 MarkDuplicates Tracking 322079 as yet unmatched pairs. 41426 records in RAM.
INFO 2026-06-08 08:04:23 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr15:43,616,492
INFO 2026-06-08 08:04:23 MarkDuplicates Tracking 319078 as yet unmatched pairs. 38036 records in RAM.
INFO 2026-06-08 08:04:25 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr15:51,242,803
INFO 2026-06-08 08:04:25 MarkDuplicates Tracking 317350 as yet unmatched pairs. 35546 records in RAM.
INFO 2026-06-08 08:04:28 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr15:65,101,749
INFO 2026-06-08 08:04:28 MarkDuplicates Tracking 313215 as yet unmatched pairs. 30336 records in RAM.
INFO 2026-06-08 08:04:31 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr15:73,702,993
INFO 2026-06-08 08:04:31 MarkDuplicates Tracking 311675 as yet unmatched pairs. 28018 records in RAM.
INFO 2026-06-08 08:04:33 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr15:78,596,530
INFO 2026-06-08 08:04:33 MarkDuplicates Tracking 308576 as yet unmatched pairs. 24406 records in RAM.
INFO 2026-06-08 08:04:36 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr15:87,861,643
INFO 2026-06-08 08:04:36 MarkDuplicates Tracking 307350 as yet unmatched pairs. 22413 records in RAM.
INFO 2026-06-08 08:04:39 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 3s. Last read position: chr15:87,972,409
INFO 2026-06-08 08:04:39 MarkDuplicates Tracking 305934 as yet unmatched pairs. 20613 records in RAM.
INFO 2026-06-08 08:04:42 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr15:88,013,272
INFO 2026-06-08 08:04:42 MarkDuplicates Tracking 303541 as yet unmatched pairs. 17863 records in RAM.
INFO 2026-06-08 08:04:45 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr15:88,049,108
INFO 2026-06-08 08:04:45 MarkDuplicates Tracking 301737 as yet unmatched pairs. 15633 records in RAM.
INFO 2026-06-08 08:04:47 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr15:88,084,231
INFO 2026-06-08 08:04:47 MarkDuplicates Tracking 299334 as yet unmatched pairs. 12776 records in RAM.
INFO 2026-06-08 08:04:50 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr15:88,122,415
INFO 2026-06-08 08:04:50 MarkDuplicates Tracking 296826 as yet unmatched pairs. 9841 records in RAM.
INFO 2026-06-08 08:04:53 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr15:89,451,147
INFO 2026-06-08 08:04:53 MarkDuplicates Tracking 292730 as yet unmatched pairs. 5341 records in RAM.
INFO 2026-06-08 08:04:55 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr15:98,958,007
INFO 2026-06-08 08:04:55 MarkDuplicates Tracking 292237 as yet unmatched pairs. 3979 records in RAM.
INFO 2026-06-08 08:04:58 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 3s. Last read position: chr16:983,826
INFO 2026-06-08 08:04:58 MarkDuplicates Tracking 287863 as yet unmatched pairs. 43387 records in RAM.
INFO 2026-06-08 08:05:01 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr16:2,177,827
INFO 2026-06-08 08:05:01 MarkDuplicates Tracking 288121 as yet unmatched pairs. 43363 records in RAM.
INFO 2026-06-08 08:05:03 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr16:3,677,507
INFO 2026-06-08 08:05:03 MarkDuplicates Tracking 283692 as yet unmatched pairs. 38626 records in RAM.
INFO 2026-06-08 08:05:06 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr16:10,906,922
INFO 2026-06-08 08:05:06 MarkDuplicates Tracking 281022 as yet unmatched pairs. 35300 records in RAM.
INFO 2026-06-08 08:05:09 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr16:16,294,181
INFO 2026-06-08 08:05:09 MarkDuplicates Tracking 278721 as yet unmatched pairs. 32578 records in RAM.
INFO 2026-06-08 08:05:11 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr16:20,685,290
INFO 2026-06-08 08:05:11 MarkDuplicates Tracking 277241 as yet unmatched pairs. 30809 records in RAM.
INFO 2026-06-08 08:05:14 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr16:27,330,015
INFO 2026-06-08 08:05:14 MarkDuplicates Tracking 274959 as yet unmatched pairs. 28020 records in RAM.
INFO 2026-06-08 08:05:16 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr16:30,007,363
INFO 2026-06-08 08:05:16 MarkDuplicates Tracking 273123 as yet unmatched pairs. 25896 records in RAM.
INFO 2026-06-08 08:05:19 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr16:32,216,596
INFO 2026-06-08 08:05:19 MarkDuplicates Tracking 271157 as yet unmatched pairs. 23606 records in RAM.
INFO 2026-06-08 08:05:21 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr16:52,325,243
INFO 2026-06-08 08:05:21 MarkDuplicates Tracking 267794 as yet unmatched pairs. 19351 records in RAM.
INFO 2026-06-08 08:05:24 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr16:59,649,772
INFO 2026-06-08 08:05:24 MarkDuplicates Tracking 264919 as yet unmatched pairs. 15896 records in RAM.
INFO 2026-06-08 08:05:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr16:68,778,518
INFO 2026-06-08 08:05:26 MarkDuplicates Tracking 261863 as yet unmatched pairs. 12160 records in RAM.
INFO 2026-06-08 08:05:29 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 2s. Last read position: chr16:72,793,799
INFO 2026-06-08 08:05:29 MarkDuplicates Tracking 260485 as yet unmatched pairs. 10366 records in RAM.
INFO 2026-06-08 08:05:31 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr16:81,960,392
INFO 2026-06-08 08:05:31 MarkDuplicates Tracking 257704 as yet unmatched pairs. 6894 records in RAM.
INFO 2026-06-08 08:05:34 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr16:89,283,356
INFO 2026-06-08 08:05:34 MarkDuplicates Tracking 254257 as yet unmatched pairs. 2922 records in RAM.
INFO 2026-06-08 08:05:37 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 3s. Last read position: chr17:1,348,191
INFO 2026-06-08 08:05:37 MarkDuplicates Tracking 252525 as yet unmatched pairs. 60913 records in RAM.
INFO 2026-06-08 08:05:40 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr17:4,895,332
INFO 2026-06-08 08:05:40 MarkDuplicates Tracking 249010 as yet unmatched pairs. 57086 records in RAM.
INFO 2026-06-08 08:05:43 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr17:7,679,972
INFO 2026-06-08 08:05:43 MarkDuplicates Tracking 248432 as yet unmatched pairs. 56266 records in RAM.
INFO 2026-06-08 08:05:45 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr17:10,523,570
INFO 2026-06-08 08:05:45 MarkDuplicates Tracking 244293 as yet unmatched pairs. 51807 records in RAM.
INFO 2026-06-08 08:05:48 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr17:17,213,541
INFO 2026-06-08 08:05:48 MarkDuplicates Tracking 242951 as yet unmatched pairs. 50011 records in RAM.
INFO 2026-06-08 08:05:50 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr17:20,428,799
INFO 2026-06-08 08:05:50 MarkDuplicates Tracking 238969 as yet unmatched pairs. 45721 records in RAM.
INFO 2026-06-08 08:05:53 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr17:30,610,874
INFO 2026-06-08 08:05:53 MarkDuplicates Tracking 235840 as yet unmatched pairs. 42121 records in RAM.
INFO 2026-06-08 08:05:56 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr17:35,119,394
INFO 2026-06-08 08:05:56 MarkDuplicates Tracking 234177 as yet unmatched pairs. 40065 records in RAM.
INFO 2026-06-08 08:05:58 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr17:37,974,749
INFO 2026-06-08 08:05:58 MarkDuplicates Tracking 231415 as yet unmatched pairs. 37053 records in RAM.
INFO 2026-06-08 08:05:59 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,321
INFO 2026-06-08 08:05:59 MarkDuplicates Tracking 230855 as yet unmatched pairs. 36321 records in RAM.
INFO 2026-06-08 08:06:02 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr17:40,355,201
INFO 2026-06-08 08:06:02 MarkDuplicates Tracking 228162 as yet unmatched pairs. 33333 records in RAM.
INFO 2026-06-08 08:06:04 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr17:42,028,127
INFO 2026-06-08 08:06:04 MarkDuplicates Tracking 225426 as yet unmatched pairs. 30275 records in RAM.
INFO 2026-06-08 08:06:06 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr17:43,064,460
INFO 2026-06-08 08:06:06 MarkDuplicates Tracking 224914 as yet unmatched pairs. 29467 records in RAM.
INFO 2026-06-08 08:06:09 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 3s. Last read position: chr17:44,424,493
INFO 2026-06-08 08:06:09 MarkDuplicates Tracking 220694 as yet unmatched pairs. 24974 records in RAM.
INFO 2026-06-08 08:06:11 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:47,141,815
INFO 2026-06-08 08:06:11 MarkDuplicates Tracking 218823 as yet unmatched pairs. 22805 records in RAM.
INFO 2026-06-08 08:06:13 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr17:50,658,286
INFO 2026-06-08 08:06:13 MarkDuplicates Tracking 216647 as yet unmatched pairs. 20336 records in RAM.
INFO 2026-06-08 08:06:15 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:59,935,318
INFO 2026-06-08 08:06:15 MarkDuplicates Tracking 212747 as yet unmatched pairs. 15904 records in RAM.
INFO 2026-06-08 08:06:17 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr17:63,941,545
INFO 2026-06-08 08:06:17 MarkDuplicates Tracking 210048 as yet unmatched pairs. 12842 records in RAM.
INFO 2026-06-08 08:06:19 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:69,024,167
INFO 2026-06-08 08:06:19 MarkDuplicates Tracking 207038 as yet unmatched pairs. 9436 records in RAM.
INFO 2026-06-08 08:06:21 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr17:75,778,871
INFO 2026-06-08 08:06:21 MarkDuplicates Tracking 205828 as yet unmatched pairs. 7754 records in RAM.
INFO 2026-06-08 08:06:23 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr17:80,288,162
INFO 2026-06-08 08:06:23 MarkDuplicates Tracking 201444 as yet unmatched pairs. 3022 records in RAM.
INFO 2026-06-08 08:06:26 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr18:178,947
INFO 2026-06-08 08:06:26 MarkDuplicates Tracking 198708 as yet unmatched pairs. 27527 records in RAM.
INFO 2026-06-08 08:06:28 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr18:14,886,498
INFO 2026-06-08 08:06:28 MarkDuplicates Tracking 194981 as yet unmatched pairs. 23207 records in RAM.
INFO 2026-06-08 08:06:31 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr18:37,222,252
INFO 2026-06-08 08:06:31 MarkDuplicates Tracking 189361 as yet unmatched pairs. 16835 records in RAM.