Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/dfb8000eb03f4a04c2e829c60d747f/dna_s769.Chimeric.out.junction
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e6e04358001713c4a59c44ac8e1d3f/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e6e04358001713c4a59c44ac8e1d3f/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/0e1080a4e9400fb7462d6059c61da5/dna_s769_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/0e1080a4e9400fb7462d6059c61da5/dna_s769_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.MiLITKzNY1/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary
-sample contains 118711267 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir -J /tmp/nxf.MiLITKzNY1/dna_s769.Chimeric.out.junction -O /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.MiLITKzNY1/dna_s769.Chimeric.out.junction
-building interval tree based on /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes
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[670000], rate=54993.16/min -building interval tree based on /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[670000], rate=54843.11/min -building interval tree based on /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[670000], rate=50821.74/min -building interval tree based on /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[650000], rate=48567.87/min
[660000], rate=48768.47/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir --filt_file /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
6000000.00 reads per min processed...
4500000.00 reads per min processed...
4800000.00 reads per min processed...
5000000.00 reads per min processed...
4500000.00 reads per min processed...
4666666.67 reads per min processed...
4800000.00 reads per min processed...
4500000.00 reads per min processed...
4615384.62 reads per min processed...
4400000.00 reads per min processed...
4500000.00 reads per min processed...
4588235.29 reads per min processed...
4666666.67 reads per min processed...
4736842.11 reads per min processed...
4571428.57 reads per min processed...
4636363.64 reads per min processed...
4695652.17 reads per min processed...
4560000.00 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.MiLITKzNY1/dna_s769.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -167812.974637
EM: Round [1] log likelihood: -167707.624153
EM: Round [2] log likelihood: -167673.628140
EM: Round [3] log likelihood: -167658.772093
EM: Round [4] log likelihood: -167651.005698
EM: Round [5] log likelihood: -167646.507331
EM: Round [6] log likelihood: -167643.738398
EM: Round [7] log likelihood: -167641.963804
EM: Round [8] log likelihood: -167640.790784
EM: Round [9] log likelihood: -167639.994783
EM: Round [10] log likelihood: -167639.441828
EM: Round [11] log likelihood: -167639.049479
EM: Round [12] log likelihood: -167638.765678
EM: Round [13] log likelihood: -167638.556782
EM: Round [14] log likelihood: -167638.400571
EM: Round [15] log likelihood: -167638.282076
EM: Round [16] log likelihood: -167638.191016
EM: Round [17] log likelihood: -167638.120210
EM: Round [18] log likelihood: -167638.064558
EM: Round [19] log likelihood: -167638.020386
EM: Round [20] log likelihood: -167637.985006
EM: Round [21] log likelihood: -167637.956432
EM: Round [22] log likelihood: -167637.933176
EM: Round [23] log likelihood: -167637.914110
EM: Round [24] log likelihood: -167637.898373
EM: Round [25] log likelihood: -167637.885302
EM: Round [26] log likelihood: -167637.874378
EM: Round [27] log likelihood: -167637.865196
EM: Round [28] log likelihood: -167637.857436
EM: Round [29] log likelihood: -167637.850842
EM: Round [30] log likelihood: -167637.845211
EM: Round [31] log likelihood: -167637.840378
EM: Round [32] log likelihood: -167637.836210
EM: Round [33] log likelihood: -167637.832598
EM: Round [34] log likelihood: -167637.829455
EM: Round [35] log likelihood: -167637.826707
EM: Round [36] log likelihood: -167637.824293
EM: Round [37] log likelihood: -167637.822166
EM: Round [38] log likelihood: -167637.820281
EM: Round [39] log likelihood: -167637.818607
EM: Round [40] log likelihood: -167637.817112
EM: Round [41] log likelihood: -167637.815773
EM: Round [42] log likelihood: -167637.814569
EM: Round [43] log likelihood: -167637.813483
EM: Round [44] log likelihood: -167637.812500
EM: Round [45] log likelihood: -167637.811607
EM: Round [46] log likelihood: -167637.810793
EM: Round [47] log likelihood: -167637.810049
EM: Round [48] log likelihood: -167637.809367
EM: Round [49] log likelihood: -167637.808740
EM: Round [50] log likelihood: -167637.808162
EM: Round [51] log likelihood: -167637.807629
EM: Round [52] log likelihood: -167637.807134
EM: Round [53] log likelihood: -167637.806675
EM: Round [54] log likelihood: -167637.806247
EM: Round [55] log likelihood: -167637.805849
EM: Round [56] log likelihood: -167637.805477
EM: Round [57] log likelihood: -167637.805128
EM: Round [58] log likelihood: -167637.804801
EM: Round [59] log likelihood: -167637.804494
EM: Round [60] log likelihood: -167637.804206
EM: Round [61] log likelihood: -167637.803933
EM: Round [62] log likelihood: -167637.803676
EM: Round [63] log likelihood: -167637.803434
EM: Round [64] log likelihood: -167637.803204
EM: Round [65] log likelihood: -167637.802986
EM: Round [66] log likelihood: -167637.802780
EM: Round [67] log likelihood: -167637.802584
EM: Round [68] log likelihood: -167637.802397
EM: Round [69] log likelihood: -167637.802220
EM: Round [70] log likelihood: -167637.802051
EM: Round [71] log likelihood: -167637.801890
EM: Round [72] log likelihood: -167637.801736
EM: Round [73] log likelihood: -167637.801589
EM: Round [74] log likelihood: -167637.801449
EM: Round [75] log likelihood: -167637.801314
EM: Round [76] log likelihood: -167637.801186
EM: Round [77] log likelihood: -167637.801063
EM: Round [78] log likelihood: -167637.800945
EM: Round [79] log likelihood: -167637.800831
EM: Round [80] log likelihood: -167637.800723
EM: Round [81] log likelihood: -167637.800618
EM: Round [82] log likelihood: -167637.800518
EM: Round [83] log likelihood: -167637.800421
EM: Stopping iterations at round 83 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -167779.766569
EM: Round [1] log likelihood: -167678.885771
EM: Round [2] log likelihood: -167647.354711
EM: Round [3] log likelihood: -167634.062519
EM: Round [4] log likelihood: -167627.330867
EM: Round [5] log likelihood: -167623.527362
EM: Round [6] log likelihood: -167621.223634
EM: Round [7] log likelihood: -167619.758429
EM: Round [8] log likelihood: -167618.790876
EM: Round [9] log likelihood: -167618.131945
EM: Round [10] log likelihood: -167617.671173
EM: Round [11] log likelihood: -167617.341400
EM: Round [12] log likelihood: -167617.100473
EM: Round [13] log likelihood: -167616.921205
EM: Round [14] log likelihood: -167616.785628
EM: Round [15] log likelihood: -167616.681601
EM: Round [16] log likelihood: -167616.600746
EM: Round [17] log likelihood: -167616.537174
EM: Round [18] log likelihood: -167616.486673
EM: Round [19] log likelihood: -167616.446178
EM: Round [20] log likelihood: -167616.413432
EM: Round [21] log likelihood: -167616.386747
EM: Round [22] log likelihood: -167616.364845
EM: Round [23] log likelihood: -167616.346752
EM: Round [24] log likelihood: -167616.331712
EM: Round [25] log likelihood: -167616.319138
EM: Round [26] log likelihood: -167616.308567
EM: Round [27] log likelihood: -167616.299635
EM: Round [28] log likelihood: -167616.292049
EM: Round [29] log likelihood: -167616.285575
EM: Round [30] log likelihood: -167616.280024
EM: Round [31] log likelihood: -167616.275242
EM: Round [32] log likelihood: -167616.271105
EM: Round [33] log likelihood: -167616.267511
EM: Round [34] log likelihood: -167616.264374
EM: Round [35] log likelihood: -167616.261625
EM: Round [36] log likelihood: -167616.259206
EM: Round [37] log likelihood: -167616.257068
EM: Round [38] log likelihood: -167616.255173
EM: Round [39] log likelihood: -167616.253485
EM: Round [40] log likelihood: -167616.251977
EM: Round [41] log likelihood: -167616.250624
EM: Round [42] log likelihood: -167616.249406
EM: Round [43] log likelihood: -167616.248306
EM: Round [44] log likelihood: -167616.247309
EM: Round [45] log likelihood: -167616.246403
EM: Round [46] log likelihood: -167616.245577
EM: Round [47] log likelihood: -167616.244821
EM: Round [48] log likelihood: -167616.244127
EM: Round [49] log likelihood: -167616.243489
EM: Round [50] log likelihood: -167616.242901
EM: Round [51] log likelihood: -167616.242357
EM: Round [52] log likelihood: -167616.241853
EM: Round [53] log likelihood: -167616.241384
EM: Round [54] log likelihood: -167616.240949
EM: Round [55] log likelihood: -167616.240542
EM: Round [56] log likelihood: -167616.240162
EM: Round [57] log likelihood: -167616.239806
EM: Round [58] log likelihood: -167616.239472
EM: Round [59] log likelihood: -167616.239159
EM: Round [60] log likelihood: -167616.238864
EM: Round [61] log likelihood: -167616.238585
EM: Round [62] log likelihood: -167616.238323
EM: Round [63] log likelihood: -167616.238075
EM: Round [64] log likelihood: -167616.237840
EM: Round [65] log likelihood: -167616.237617
EM: Round [66] log likelihood: -167616.237406
EM: Round [67] log likelihood: -167616.237206
EM: Round [68] log likelihood: -167616.237015
EM: Round [69] log likelihood: -167616.236834
EM: Round [70] log likelihood: -167616.236661
EM: Round [71] log likelihood: -167616.236496
EM: Round [72] log likelihood: -167616.236339
EM: Round [73] log likelihood: -167616.236189
EM: Round [74] log likelihood: -167616.236046
EM: Round [75] log likelihood: -167616.235909
EM: Round [76] log likelihood: -167616.235777
EM: Round [77] log likelihood: -167616.235651
EM: Round [78] log likelihood: -167616.235531
EM: Round [79] log likelihood: -167616.235415
EM: Round [80] log likelihood: -167616.235304
EM: Round [81] log likelihood: -167616.235198
EM: Round [82] log likelihood: -167616.235095
EM: Round [83] log likelihood: -167616.234997
EM: Stopping iterations at round 83 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 118711267 > /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir > /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir --annotate /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir
-done, see /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 260, filtered: 12580)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.MiLITKzNY1/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.MiLITKzNY1/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000286045.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000270788.1]
WARNING, no entry stored in dbm for [ENSG00000249274.1]
WARNING, no entry stored in dbm for [ENSG00000234106.3]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000244932.2]
WARNING, no entry stored in dbm for [ENSG00000223652.2]
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000213205.3]
WARNING, no entry stored in dbm for [ENSG00000286353.1]
WARNING, no entry stored in dbm for [ENSG00000203930.12]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000240710.1]
WARNING, no entry stored in dbm for [ENSG00000285413.1]
WARNING, no entry stored in dbm for [ENSG00000218890.1]
WARNING, no entry stored in dbm for [ENSG00000228445.1]
WARNING, no entry stored in dbm for [ENSG00000272770.1]
WARNING, no entry stored in dbm for [ENSG00000255248.9]
WARNING, no entry stored in dbm for [ENSG00000182165.18]
WARNING, no entry stored in dbm for [ENSG00000223566.1]
WARNING, no entry stored in dbm for [ENSG00000223566.1]
WARNING, no entry stored in dbm for [ENSG00000254661.3]
WARNING, no entry stored in dbm for [ENSG00000279696.1]
WARNING, no entry stored in dbm for [ENSG00000278131.1]
WARNING, no entry stored in dbm for [ENSG00000235927.4]
WARNING, no entry stored in dbm for [ENSG00000206147.5]
WARNING, no entry stored in dbm for [ENSG00000205433.4]
WARNING, no entry stored in dbm for [ENSG00000213655.4]
WARNING, no entry stored in dbm for [ENSG00000214121.4]
WARNING, no entry stored in dbm for [ENSG00000235486.1]
WARNING, no entry stored in dbm for [ENSG00000224086.6]
WARNING, no entry stored in dbm for [ENSG00000224789.1]
WARNING, no entry stored in dbm for [ENSG00000224977.1]
WARNING, no entry stored in dbm for [ENSG00000234072.1]
WARNING, no entry stored in dbm for [ENSG00000257480.1]
WARNING, no entry stored in dbm for [ENSG00000238222.3]
WARNING, no entry stored in dbm for [ENSG00000227533.6]
WARNING, no entry stored in dbm for [ENSG00000222030.1]
WARNING, no entry stored in dbm for [ENSG00000261824.7]
WARNING, no entry stored in dbm for [ENSG00000206192.7]
WARNING, no entry stored in dbm for [ENSG00000258011.2]
WARNING, no entry stored in dbm for [ENSG00000259673.6]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000235032.1]
WARNING, no entry stored in dbm for [ENSG00000287172.1]
WARNING, no entry stored in dbm for [ENSG00000274827.4]
WARNING, no entry stored in dbm for [ENSG00000229515.1]
WARNING, no entry stored in dbm for [ENSG00000285230.2]
WARNING, no entry stored in dbm for [ENSG00000259720.2]
WARNING, no entry stored in dbm for [ENSG00000223912.1]
WARNING, no entry stored in dbm for [ENSG00000206195.11]
WARNING, no entry stored in dbm for [ENSG00000233221.7]
WARNING, no entry stored in dbm for [ENSG00000260066.1]
WARNING, no entry stored in dbm for [ENSG00000254661.3]
WARNING, no entry stored in dbm for [ENSG00000271162.1]
WARNING, no entry stored in dbm for [ENSG00000237480.3]
WARNING, no entry stored in dbm for [ENSG00000254863.2]
WARNING, no entry stored in dbm for [ENSG00000259719.6]
WARNING, no entry stored in dbm for [ENSG00000279159.1]
WARNING, no entry stored in dbm for [ENSG00000229106.1]
WARNING, no entry stored in dbm for [ENSG00000197023.6]
WARNING, no entry stored in dbm for [ENSG00000229106.1]
WARNING, no entry stored in dbm for [ENSG00000250442.1]
WARNING, no entry stored in dbm for [ENSG00000281357.3]
WARNING, no entry stored in dbm for [ENSG00000282965.1]
WARNING, no entry stored in dbm for [ENSG00000251297.1]
WARNING, no entry stored in dbm for [ENSG00000241838.3]
WARNING, no entry stored in dbm for [ENSG00000229473.2]
WARNING, no entry stored in dbm for [ENSG00000243064.8]
WARNING, no entry stored in dbm for [ENSG00000230908.2]
WARNING, no entry stored in dbm for [ENSG00000226409.3]
WARNING, no entry stored in dbm for [ENSG00000235314.1]
WARNING, no entry stored in dbm for [ENSG00000285742.1]
WARNING, no entry stored in dbm for [ENSG00000287266.1]
WARNING, no entry stored in dbm for [ENSG00000286005.1]
WARNING, no entry stored in dbm for [ENSG00000286196.1]
WARNING, no entry stored in dbm for [ENSG00000233406.5]
WARNING, no entry stored in dbm for [ENSG00000271573.1]
WARNING, no entry stored in dbm for [ENSG00000286063.1]
WARNING, no entry stored in dbm for [ENSG00000237686.7]
WARNING, no entry stored in dbm for [ENSG00000271609.1]
WARNING, no entry stored in dbm for [ENSG00000233029.3]
WARNING, no entry stored in dbm for [ENSG00000213431.4]
WARNING, no entry stored in dbm for [ENSG00000286876.1]
WARNING, no entry stored in dbm for [ENSG00000271795.1]
WARNING, no entry stored in dbm for [ENSG00000286271.2]
WARNING, no entry stored in dbm for [ENSG00000257261.6]
WARNING, no entry stored in dbm for [ENSG00000260249.3]
WARNING, no entry stored in dbm for [ENSG00000285841.1]
WARNING, no entry stored in dbm for [ENSG00000243004.6]
WARNING, no entry stored in dbm for [ENSG00000237294.1]
WARNING, no entry stored in dbm for [ENSG00000280054.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
* STAR-Fusion complete. See output: /tmp/nxf.MiLITKzNY1/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)