Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/78da46eebec162f4b36bf094aa181b/dna_s761_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/e6a3ef07d70293d34ea1c190e6789d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/e6a3ef07d70293d34ea1c190e6789d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/78da46eebec162f4b36bf094aa181b/dna_s761_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/1c8fe6a6930ebbd9aaee7ba7e2cb3f/dna_s761.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.DdXMymGKDp/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.DdXMymGKDp/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.DdXMymGKDp/./star-fusion.preliminary
-sample contains 176954938 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.DdXMymGKDp/ctat_genome_lib_build_dir  -J /tmp/nxf.DdXMymGKDp/dna_s761.Chimeric.out.junction  -O /tmp/nxf.DdXMymGKDp/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.DdXMymGKDp/dna_s761.Chimeric.out.junction