.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (dna_s760)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/dbdb217d0c53fd893dd60016854753/.command.log
Size: 651 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (dna_s760)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d345eaf7b09eff391ff389fb83eb2d/dna_s760.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/dbdb217d0c53fd893dd60016854753/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/dbdb217d0c53fd893dd60016854753/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  dna_s760: vaf_p90=1.000000 -> CLEAN

Output saved to: dna_s760.predictions.csv
Summary: 0/1 samples flagged as contaminated