.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (dna_s768)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/dfe4a857b46613678dfce76ad289f8/.command.log
Size: 1.2 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (dna_s768)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fff52061-f714-4c14-bb2c-bf5549840817/05/a061f8e085bc2c223881472e8925e9/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/dfe4a857b46613678dfce76ad289f8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/dfe4a857b46613678dfce76ad289f8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/3e93b627c3107824768c2151b7b35b/dna_s768.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0ca73655efe217a31a74b1c509feae/dna_s768.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
CEACAM3--CEACAM3
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing CEACAM3--CEACAM3:   0%|          | 0/1 [00:00<?, ?it/s]
Processing CEACAM3--CEACAM3: 100%|██████████| 1/1 [00:00<00:00,  8.53it/s]
Processing CEACAM3--CEACAM3: 100%|██████████| 1/1 [00:00<00:00,  8.51it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory