Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/7327a517ab56a882868c6e4db6bc2d/dna_s760_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/0da2ea1648883f7660b351ccde7824/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/0da2ea1648883f7660b351ccde7824/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/7327a517ab56a882868c6e4db6bc2d/dna_s760_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/3ed35126b02b3f0485d5e6458a9c46/dna_s760.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.m2StCavQz7/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.m2StCavQz7/./star-fusion.preliminary
-sample contains 143717665 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir -J /tmp/nxf.m2StCavQz7/dna_s760.Chimeric.out.junction -O /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.m2StCavQz7/dna_s760.Chimeric.out.junction
-building interval tree based on /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[720000], rate=50883.39/min -building interval tree based on /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[720000], rate=49427.92/min -building interval tree based on /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[720000], rate=46905.54/min -building interval tree based on /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[720000], rate=45378.15/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir --filt_file /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
3000000.00 reads per min processed...
4000000.00 reads per min processed...
4500000.00 reads per min processed...
4000000.00 reads per min processed...
4285714.29 reads per min processed...
4500000.00 reads per min processed...
4200000.00 reads per min processed...
4363636.36 reads per min processed...
4500000.00 reads per min processed...
4285714.29 reads per min processed...
4400000.00 reads per min processed...
4500000.00 reads per min processed...
4588235.29 reads per min processed...
4421052.63 reads per min processed...
4500000.00 reads per min processed...
4571428.57 reads per min processed...
4636363.64 reads per min processed...
4695652.17 reads per min processed...
4750000.00 reads per min processed...
4615384.62 reads per min processed...
4666666.67 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.m2StCavQz7/dna_s760.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -165494.376868
EM: Round [1] log likelihood: -165407.531308
EM: Round [2] log likelihood: -165381.165897
EM: Round [3] log likelihood: -165370.034167
EM: Round [4] log likelihood: -165364.501207
EM: Round [5] log likelihood: -165361.471309
EM: Round [6] log likelihood: -165359.690341
EM: Round [7] log likelihood: -165358.578849
EM: Round [8] log likelihood: -165357.847349
EM: Round [9] log likelihood: -165357.342930
EM: Round [10] log likelihood: -165356.980855
EM: Round [11] log likelihood: -165356.712002
EM: Round [12] log likelihood: -165356.506645
EM: Round [13] log likelihood: -165356.346057
EM: Round [14] log likelihood: -165356.217984
EM: Round [15] log likelihood: -165356.114138
EM: Round [16] log likelihood: -165356.028738
EM: Round [17] log likelihood: -165355.957645
EM: Round [18] log likelihood: -165355.897827
EM: Round [19] log likelihood: -165355.847019
EM: Round [20] log likelihood: -165355.803499
EM: Round [21] log likelihood: -165355.765938
EM: Round [22] log likelihood: -165355.733298
EM: Round [23] log likelihood: -165355.704758
EM: Round [24] log likelihood: -165355.679661
EM: Round [25] log likelihood: -165355.657478
EM: Round [26] log likelihood: -165355.637777
EM: Round [27] log likelihood: -165355.620204
EM: Round [28] log likelihood: -165355.604468
EM: Round [29] log likelihood: -165355.590325
EM: Round [30] log likelihood: -165355.577570
EM: Round [31] log likelihood: -165355.566033
EM: Round [32] log likelihood: -165355.555568
EM: Round [33] log likelihood: -165355.546049
EM: Round [34] log likelihood: -165355.537371
EM: Round [35] log likelihood: -165355.529442
EM: Round [36] log likelihood: -165355.522182
EM: Round [37] log likelihood: -165355.515522
EM: Round [38] log likelihood: -165355.509401
EM: Round [39] log likelihood: -165355.503768
EM: Round [40] log likelihood: -165355.498575
EM: Round [41] log likelihood: -165355.493781
EM: Round [42] log likelihood: -165355.489350
EM: Round [43] log likelihood: -165355.485249
EM: Round [44] log likelihood: -165355.481450
EM: Round [45] log likelihood: -165355.477926
EM: Round [46] log likelihood: -165355.474654
EM: Round [47] log likelihood: -165355.471615
EM: Round [48] log likelihood: -165355.468788
EM: Round [49] log likelihood: -165355.466157
EM: Round [50] log likelihood: -165355.463706
EM: Round [51] log likelihood: -165355.461422
EM: Round [52] log likelihood: -165355.459292
EM: Round [53] log likelihood: -165355.457304
EM: Round [54] log likelihood: -165355.455447
EM: Round [55] log likelihood: -165355.453713
EM: Round [56] log likelihood: -165355.452092
EM: Round [57] log likelihood: -165355.450577
EM: Round [58] log likelihood: -165355.449159
EM: Round [59] log likelihood: -165355.447832
EM: Round [60] log likelihood: -165355.446590
EM: Round [61] log likelihood: -165355.445426
EM: Round [62] log likelihood: -165355.444336
EM: Round [63] log likelihood: -165355.443315
EM: Round [64] log likelihood: -165355.442357
EM: Round [65] log likelihood: -165355.441459
EM: Round [66] log likelihood: -165355.440617
EM: Round [67] log likelihood: -165355.439827
EM: Round [68] log likelihood: -165355.439086
EM: Round [69] log likelihood: -165355.438391
EM: Round [70] log likelihood: -165355.437738
EM: Round [71] log likelihood: -165355.437125
EM: Round [72] log likelihood: -165355.436549
EM: Round [73] log likelihood: -165355.436009
EM: Round [74] log likelihood: -165355.435501
EM: Round [75] log likelihood: -165355.435024
EM: Round [76] log likelihood: -165355.434576
EM: Round [77] log likelihood: -165355.434155
EM: Round [78] log likelihood: -165355.433759
EM: Round [79] log likelihood: -165355.433387
EM: Round [80] log likelihood: -165355.433038
EM: Round [81] log likelihood: -165355.432709
EM: Round [82] log likelihood: -165355.432400
EM: Round [83] log likelihood: -165355.432110
EM: Round [84] log likelihood: -165355.431837
EM: Round [85] log likelihood: -165355.431580
EM: Round [86] log likelihood: -165355.431339
EM: Round [87] log likelihood: -165355.431112
EM: Round [88] log likelihood: -165355.430898
EM: Round [89] log likelihood: -165355.430698
EM: Round [90] log likelihood: -165355.430509
EM: Round [91] log likelihood: -165355.430331
EM: Round [92] log likelihood: -165355.430164
EM: Round [93] log likelihood: -165355.430007
EM: Round [94] log likelihood: -165355.429859
EM: Round [95] log likelihood: -165355.429720
EM: Round [96] log likelihood: -165355.429589
EM: Round [97] log likelihood: -165355.429466
EM: Round [98] log likelihood: -165355.429350
EM: Round [99] log likelihood: -165355.429241
EM: Round [100] log likelihood: -165355.429139
EM: Round [101] log likelihood: -165355.429043
EM: Stopping iterations at round 101 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -165488.373087
EM: Round [1] log likelihood: -165403.193982
EM: Round [2] log likelihood: -165378.046574
EM: Round [3] log likelihood: -165367.787716
EM: Round [4] log likelihood: -165362.838060
EM: Round [5] log likelihood: -165360.188109
EM: Round [6] log likelihood: -165358.657460
EM: Round [7] log likelihood: -165357.716926
EM: Round [8] log likelihood: -165357.107826
EM: Round [9] log likelihood: -165356.695340
EM: Round [10] log likelihood: -165356.405320
EM: Round [11] log likelihood: -165356.194967
EM: Round [12] log likelihood: -165356.038452
EM: Round [13] log likelihood: -165355.919530
EM: Round [14] log likelihood: -165355.827604
EM: Round [15] log likelihood: -165355.755523
EM: Round [16] log likelihood: -165355.698319
EM: Round [17] log likelihood: -165355.652457
EM: Round [18] log likelihood: -165355.615363
EM: Round [19] log likelihood: -165355.585129
EM: Round [20] log likelihood: -165355.560319
EM: Round [21] log likelihood: -165355.539836
EM: Round [22] log likelihood: -165355.522834
EM: Round [23] log likelihood: -165355.508652
EM: Round [24] log likelihood: -165355.496770
EM: Round [25] log likelihood: -165355.486774
EM: Round [26] log likelihood: -165355.478335
EM: Round [27] log likelihood: -165355.471186
EM: Round [28] log likelihood: -165355.465111
EM: Round [29] log likelihood: -165355.459935
EM: Round [30] log likelihood: -165355.455513
EM: Round [31] log likelihood: -165355.451727
EM: Round [32] log likelihood: -165355.448478
EM: Round [33] log likelihood: -165355.445686
EM: Round [34] log likelihood: -165355.443280
EM: Round [35] log likelihood: -165355.441206
EM: Round [36] log likelihood: -165355.439414
EM: Round [37] log likelihood: -165355.437864
EM: Round [38] log likelihood: -165355.436522
EM: Round [39] log likelihood: -165355.435358
EM: Round [40] log likelihood: -165355.434348
EM: Round [41] log likelihood: -165355.433471
EM: Round [42] log likelihood: -165355.432709
EM: Round [43] log likelihood: -165355.432046
EM: Round [44] log likelihood: -165355.431469
EM: Round [45] log likelihood: -165355.430966
EM: Round [46] log likelihood: -165355.430528
EM: Round [47] log likelihood: -165355.430146
EM: Round [48] log likelihood: -165355.429813
EM: Round [49] log likelihood: -165355.429522
EM: Round [50] log likelihood: -165355.429268
EM: Round [51] log likelihood: -165355.429047
EM: Round [52] log likelihood: -165355.428853
EM: Round [53] log likelihood: -165355.428684
EM: Round [54] log likelihood: -165355.428536
EM: Round [55] log likelihood: -165355.428407
EM: Round [56] log likelihood: -165355.428294
EM: Round [57] log likelihood: -165355.428196
EM: Stopping iterations at round 57 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 143717665 > /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir > /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir --annotate /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir
-done, see /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 324, filtered: 12446)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.m2StCavQz7/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.m2StCavQz7/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000213280.2]
WARNING, no entry stored in dbm for [ENSG00000267408.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000270788.1]
WARNING, no entry stored in dbm for [ENSG00000249274.1]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000288002.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000255276.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000255276.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000255276.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000255276.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000287721.1]
WARNING, no entry stored in dbm for [ENSG00000254543.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000279641.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000248441.7]
WARNING, no entry stored in dbm for [ENSG00000269235.2]
WARNING, no entry stored in dbm for [ENSG00000185182.14]
WARNING, no entry stored in dbm for [ENSG00000249963.1]
WARNING, no entry stored in dbm for [ENSG00000270641.1]
WARNING, no entry stored in dbm for [ENSG00000253563.2]
WARNING, no entry stored in dbm for [ENSG00000223566.1]
WARNING, no entry stored in dbm for [ENSG00000223566.1]
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000237356.7]
WARNING, no entry stored in dbm for [ENSG00000235917.1]
WARNING, no entry stored in dbm for [ENSG00000238062.6]
WARNING, no entry stored in dbm for [ENSG00000245498.7]
WARNING, no entry stored in dbm for [ENSG00000232044.7]
WARNING, no entry stored in dbm for [ENSG00000282668.1]
WARNING, no entry stored in dbm for [ENSG00000238116.2]
WARNING, no entry stored in dbm for [ENSG00000229391.7]
WARNING, no entry stored in dbm for [ENSG00000223883.2]
WARNING, no entry stored in dbm for [ENSG00000228956.8]
WARNING, no entry stored in dbm for [ENSG00000249244.1]
WARNING, no entry stored in dbm for [ENSG00000257122.5]
WARNING, no entry stored in dbm for [ENSG00000258203.5]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000203307.2]
WARNING, no entry stored in dbm for [ENSG00000250519.7]
WARNING, no entry stored in dbm for [ENSG00000256347.1]
WARNING, no entry stored in dbm for [ENSG00000250462.8]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000261014.2]
WARNING, no entry stored in dbm for [ENSG00000237401.8]
WARNING, no entry stored in dbm for [ENSG00000224722.3]
WARNING, no entry stored in dbm for [ENSG00000258027.2]
WARNING, no entry stored in dbm for [ENSG00000231933.7]
WARNING, no entry stored in dbm for [ENSG00000233355.7]
WARNING, no entry stored in dbm for [ENSG00000215386.13]
WARNING, no entry stored in dbm for [ENSG00000261313.2]
WARNING, no entry stored in dbm for [ENSG00000224430.2]
WARNING, no entry stored in dbm for [ENSG00000236053.1]
WARNING, no entry stored in dbm for [ENSG00000198358.4]
WARNING, no entry stored in dbm for [ENSG00000232285.1]
WARNING, no entry stored in dbm for [ENSG00000233086.8]
WARNING, no entry stored in dbm for [ENSG00000256422.6]
WARNING, no entry stored in dbm for [ENSG00000260976.2]
WARNING, no entry stored in dbm for [ENSG00000203356.2]
WARNING, no entry stored in dbm for [ENSG00000236204.6]
WARNING, no entry stored in dbm for [ENSG00000223823.1]
WARNING, no entry stored in dbm for [ENSG00000250331.2]
WARNING, no entry stored in dbm for [ENSG00000274020.4]
WARNING, no entry stored in dbm for [ENSG00000251320.1]
WARNING, no entry stored in dbm for [ENSG00000254363.6]
WARNING, no entry stored in dbm for [ENSG00000258036.2]
WARNING, no entry stored in dbm for [ENSG00000236982.1]
WARNING, no entry stored in dbm for [ENSG00000241527.1]
WARNING, no entry stored in dbm for [ENSG00000262714.1]
WARNING, no entry stored in dbm for [ENSG00000229976.2]
WARNING, no entry stored in dbm for [ENSG00000285758.2]
WARNING, no entry stored in dbm for [ENSG00000278301.1]
WARNING, no entry stored in dbm for [ENSG00000279233.1]
WARNING, no entry stored in dbm for [ENSG00000248425.1]
WARNING, no entry stored in dbm for [ENSG00000266573.6]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000260005.6]
WARNING, no entry stored in dbm for [ENSG00000286032.1]
WARNING, no entry stored in dbm for [ENSG00000225121.2]
WARNING, no entry stored in dbm for [ENSG00000228502.1]
WARNING, no entry stored in dbm for [ENSG00000260158.1]
WARNING, no entry stored in dbm for [ENSG00000253833.1]
WARNING, no entry stored in dbm for [ENSG00000256508.2]
WARNING, no entry stored in dbm for [ENSG00000213050.5]
WARNING, no entry stored in dbm for [ENSG00000237470.3]
WARNING, no entry stored in dbm for [ENSG00000251216.2]
WARNING, no entry stored in dbm for [ENSG00000254119.5]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000259516.2]
WARNING, no entry stored in dbm for [ENSG00000279851.2]
WARNING, no entry stored in dbm for [ENSG00000224271.7]
WARNING, no entry stored in dbm for [ENSG00000273828.2]
WARNING, no entry stored in dbm for [ENSG00000260062.3]
WARNING, no entry stored in dbm for [ENSG00000280424.1]
WARNING, no entry stored in dbm for [ENSG00000216657.1]
WARNING, no entry stored in dbm for [ENSG00000233747.1]
WARNING, no entry stored in dbm for [ENSG00000259087.5]
WARNING, no entry stored in dbm for [ENSG00000281450.1]
WARNING, no entry stored in dbm for [ENSG00000273119.1]
WARNING, no entry stored in dbm for [ENSG00000255273.1]
WARNING, no entry stored in dbm for [ENSG00000204818.4]
WARNING, no entry stored in dbm for [ENSG00000242017.1]
WARNING, no entry stored in dbm for [ENSG00000261826.1]
WARNING, no entry stored in dbm for [ENSG00000271457.1]
WARNING, no entry stored in dbm for [ENSG00000226149.6]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000280135.1]
WARNING, no entry stored in dbm for [ENSG00000280135.1]
WARNING, no entry stored in dbm for [ENSG00000280135.1]
WARNING, no entry stored in dbm for [ENSG00000258743.6]
WARNING, no entry stored in dbm for [ENSG00000229186.4]
WARNING, no entry stored in dbm for [ENSG00000273773.1]
WARNING, no entry stored in dbm for [ENSG00000277304.1]
WARNING, no entry stored in dbm for [ENSG00000197815.4]
WARNING, no entry stored in dbm for [ENSG00000279834.1]
WARNING, no entry stored in dbm for [ENSG00000215288.5]
WARNING, no entry stored in dbm for [ENSG00000280449.1]
WARNING, no entry stored in dbm for [ENSG00000255511.1]
WARNING, no entry stored in dbm for [ENSG00000176134.5]
WARNING, no entry stored in dbm for [ENSG00000255750.6]
WARNING, no entry stored in dbm for [ENSG00000240418.1]
WARNING, no entry stored in dbm for [ENSG00000257674.1]
WARNING, no entry stored in dbm for [ENSG00000278083.1]
WARNING, no entry stored in dbm for [ENSG00000279235.1]
WARNING, no entry stored in dbm for [ENSG00000229020.4]
WARNING, no entry stored in dbm for [ENSG00000213798.3]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
* STAR-Fusion complete. See output: /tmp/nxf.m2StCavQz7/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)