.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s712)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/0dcac2b4ac8668cc07480d712e4cc0/.command.sh
Size: 449 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s712)
Attempt

Content

#!/bin/bash -euo pipefail
cat dna_s712_S54_L005_R1_001.fastq.gz dna_s712_S54_L006_R1_001.fastq.gz dna_s712_S54_L007_R1_001.fastq.gz > dna_s712_R1.fastq.gz
cat dna_s712_S54_L005_R2_001.fastq.gz dna_s712_S54_L006_R2_001.fastq.gz dna_s712_S54_L007_R2_001.fastq.gz > dna_s712_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS