File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/c5c0e7bead0ebd6eb344e1bfd35eb1/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:07:43Z thread 438 Sample sheet being processed by common lib? Yes
2026-06-08T06:07:43Z thread 438 SampleSheet Settings: 
2026-06-08T06:07:43Z thread 438   FastqCompressionFormat = gzip
2026-06-08T06:07:43Z thread 438   NoLaneSplitting = FALSE
2026-06-08T06:07:43Z thread 438   OverrideCycles = Y151;I8;I8;Y151
2026-06-08T06:07:43Z thread 438   SoftwareVersion = 4.3.6
2026-06-08T06:07:43Z thread 438 
2026-06-08T06:07:43Z thread 438 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:07:43Z thread 438 shared-thread-linux-native-asio output is disabled
2026-06-08T06:07:43Z thread 438 bcl-convert Version 4.4.6
2026-06-08T06:07:43Z thread 438 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:07:43Z thread 438 Command Line: --tiles s_1 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:07:43Z thread 438 Conversion Begins.
2026-06-08T06:07:43Z thread 438 Input BCL Information:
2026-06-08T06:07:43Z thread 438     Read Structure: 2026-06-08T06:07:43Z thread 438 Y1512026-06-08T06:07:43Z thread 438 ;2026-06-08T06:07:43Z thread 438 I82026-06-08T06:07:43Z thread 438 ;2026-06-08T06:07:43Z thread 438 I82026-06-08T06:07:43Z thread 438 ;2026-06-08T06:07:43Z thread 438 Y1512026-06-08T06:07:43Z thread 438 
2026-06-08T06:07:43Z thread 438     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:07:43Z thread 438     BCL file format: cbcl
2026-06-08T06:07:43Z thread 438     Positions file format: slocs
2026-06-08T06:07:43Z thread 438     Filter file format: filter
2026-06-08T06:07:43Z thread 438 Conversion Information:
2026-06-08T06:07:43Z thread 438     Tile filtering: converting 784/6272 tiles
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 1: 48
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 2: 48
2026-06-08T06:07:43Z thread 438     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 3: 48
2026-06-08T06:07:43Z thread 438     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 4: 48
2026-06-08T06:07:43Z thread 438     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 5: 24
2026-06-08T06:07:43Z thread 438     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 6: 24
2026-06-08T06:07:43Z thread 438     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 7: 24
2026-06-08T06:07:43Z thread 438     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Sample Count for Lane 8: 24
2026-06-08T06:07:43Z thread 438     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:43Z thread 438     Expected number of sample FASTQ files to be created: 96
2026-06-08T06:07:43Z thread 438 # CPU hw threads available: 64
2026-06-08T06:07:43Z thread 438 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:07:43Z thread 438 SW compressors: 64
2026-06-08T06:07:43Z thread 438 SW decompressors: 32
2026-06-08T06:07:43Z thread 438 SW FASTQ compression level: 1
2026-06-08T06:26:19Z thread 438 Lane 1 Post-run Information:
2026-06-08T06:26:19Z thread 438     Total clusters: 4178183494
2026-06-08T06:26:19Z thread 438     Total Genomic Reads: 8356366988
2026-06-08T06:26:19Z thread 438     Total Genomic Input Gigabases 1261.81
2026-06-08T06:26:19Z thread 438     Minimum reads for a sample: 35152
2026-06-08T06:26:19Z thread 438     Maximum reads for a sample: 420743900
2026-06-08T06:26:19Z thread 438     Average reads per sample: 164266237.08
2026-06-08T06:26:19Z thread 438     Undetermined reads: 471587608
2026-06-08T06:26:20Z thread 438 Conversion Complete.