.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (659_bqK_T1_TRNA_1_B2372Y3LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/2b156b76900bfd5119868f5b31ff9c/.command.log
Size: 821 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (659_bqK_T1_TRNA_1_B2372Y3LT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/2b156b76900bfd5119868f5b31ff9c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/2b156b76900bfd5119868f5b31ff9c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/d0a61d8e12285d291e64514b86f741/659_bqK_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/54710ccf84afb62882eaabb39a55a4/659_bqK_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory