Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/cc2342c7cfd361e3b444d92a716def/659_beZ_T1_TRNA_2_B2372Y3LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/e0fa50ef7f2377179c8e6350d6b61f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/4e809eec217c6a368666cf3cf3ad99/kallisto
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/e0fa50ef7f2377179c8e6350d6b61f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/cc2342c7cfd361e3b444d92a716def/659_beZ_T1_TRNA_2_B2372Y3LT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)


[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 659_beZ_T1_TRNA_2_B2372Y3LT4_1_1.fastp.fastq.gz
                             659_beZ_T1_TRNA_2_B2372Y3LT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
[progress] 1M reads processed (96.8% mapped)             
[progress] 2M reads processed (96.8% mapped)             
[progress] 3M reads processed (96.8% mapped)             
[progress] 4M reads processed (96.8% mapped)             
[progress] 5M reads processed (96.8% mapped)             
[progress] 6M reads processed (96.8% mapped)             
[progress] 7M reads processed (96.8% mapped)             
[progress] 8M reads processed (96.8% mapped)             
[progress] 9M reads processed (96.8% mapped)             
[progress] 10M reads processed (96.8% mapped)             
[progress] 11M reads processed (96.8% mapped)             
[progress] 12M reads processed (96.8% mapped)             
[progress] 13M reads processed (96.8% mapped)             
[progress] 14M reads processed (96.8% mapped)             
[progress] 15M reads processed (96.8% mapped)             
[progress] 16M reads processed (96.8% mapped)             
[progress] 17M reads processed (96.8% mapped)             
[progress] 18M reads processed (96.8% mapped)             
[progress] 19M reads processed (96.8% mapped)             
[progress] 20M reads processed (96.8% mapped)              done
[quant] processed 20,518,494 reads, 19,858,938 reads pseudoaligned
[quant] estimated average fragment length: 146.5
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,234 rounds