Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/34e899494ccdd52e2cf87145d46cfa/dna_s755.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/be36b23572dfaaf3a2626787d527ee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/be36b23572dfaaf3a2626787d527ee/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/b8016cdae8287ee69f0d17c27f35bb/dna_s755.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: dna_s755.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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