.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (659_cX2_T1_TRNA_1_B2372Y3LT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d4e4f1771d84a3ca317b6bde026821/.command.sh
Size: 401 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (659_cX2_T1_TRNA_1_B2372Y3LT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
cat 659_cX2_T1_TRNA_1_B2372Y3LT4_1_S73_L008_R1_001.fastq.gz > 659_cX2_T1_TRNA_1_B2372Y3LT4_1_R1.fastq.gz
cat 659_cX2_T1_TRNA_1_B2372Y3LT4_1_S73_L008_R2_001.fastq.gz > 659_cX2_T1_TRNA_1_B2372Y3LT4_1_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS