.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONSATURATION (659_bqK_T1_TRNA_1_B2372Y3LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/0ae5cca368868b7b5adf42bf5eacfd/.command.log
Size: 915 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONSATURATION (659_bqK_T1_TRNA_1_B2372Y3LT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/004a12a7af3e1ecdb989b931a6b2a9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/0ae5cca368868b7b5adf42bf5eacfd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/0ae5cca368868b7b5adf42bf5eacfd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/d0a61d8e12285d291e64514b86f741/659_bqK_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/54710ccf84afb62882eaabb39a55a4/659_bqK_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bqK_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.