.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s734)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/5d510b8945b6b1c01fc7bc450410c0/.command.sh
Size: 509 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s734)
Attempt

Content

#!/bin/bash -euo pipefail
cat dna_s734_S4_L001_R1_001.fastq.gz dna_s734_S4_L002_R1_001.fastq.gz dna_s734_S4_L003_R1_001.fastq.gz dna_s734_S4_L004_R1_001.fastq.gz > dna_s734_R1.fastq.gz
cat dna_s734_S4_L001_R2_001.fastq.gz dna_s734_S4_L002_R2_001.fastq.gz dna_s734_S4_L003_R2_001.fastq.gz dna_s734_S4_L004_R2_001.fastq.gz > dna_s734_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS