dna_s755.bam_stat.txt - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (dna_s755)

File Info

Filename: dna_s755.bam_stat.txt
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/e7fd2fcfbffa18e973e43ed8f9fc1c/dna_s755.bam_stat.txt
Size: 858 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (dna_s755)
Attempt

Content

#==================================================
#All numbers are READ count
#==================================================

Total records:                          301559701

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        24639834
Unmapped reads:                         2777748
mapq < mapq_cut (non-unique):           10982573

mapq >= mapq_cut (unique):              263159546
Read-1:                                 131586417
Read-2:                                 131573129
Reads map to '+':                       131593882
Reads map to '-':                       131565664
Non-splice reads:                       262784508
Splice reads:                           375038
Reads mapped in proper pairs:           261921466
Proper-paired reads map to different chrom:0