Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/02ee037097c25c59fac358d4b8a901/659_dDe_T1_TRNA_1_B2372Y3LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/e3d5925efef531e73886c7ff18d7fb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/e3d5925efef531e73886c7ff18d7fb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/02ee037097c25c59fac358d4b8a901/659_dDe_T1_TRNA_1_B2372Y3LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/2b7341676a0113547697666d43f7ec/659_dDe_T1_TRNA_1_B2372Y3LT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.NQknCGMoCW/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.NQknCGMoCW/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.NQknCGMoCW/./star-fusion.preliminary
-sample contains 146282453 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.NQknCGMoCW/ctat_genome_lib_build_dir  -J /tmp/nxf.NQknCGMoCW/659_dDe_T1_TRNA_1_B2372Y3LT4_1.Chimeric.out.junction  -O /tmp/nxf.NQknCGMoCW/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.NQknCGMoCW/659_dDe_T1_TRNA_1_B2372Y3LT4_1.Chimeric.out.junction