Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/19268a254c2975eaa85657c4b49ec2/659_bld_T1_TRNA_1_B2372Y3LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/18f71cdd32f77dc09d385fde1ae5bc/659_bld_T1_TRNA_1_B2372Y3LT4_1.Chimeric.out.junction
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/d13e6adc6e85811d021f5b9bc467ba/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/d13e6adc6e85811d021f5b9bc467ba/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/19268a254c2975eaa85657c4b49ec2/659_bld_T1_TRNA_1_B2372Y3LT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.B41n4n7bR4/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.B41n4n7bR4/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.B41n4n7bR4/./star-fusion.preliminary
-sample contains 142832061 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.B41n4n7bR4/ctat_genome_lib_build_dir  -J /tmp/nxf.B41n4n7bR4/659_bld_T1_TRNA_1_B2372Y3LT4_1.Chimeric.out.junction  -O /tmp/nxf.B41n4n7bR4/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.B41n4n7bR4/659_bld_T1_TRNA_1_B2372Y3LT4_1.Chimeric.out.junction