Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/004a12a7af3e1ecdb989b931a6b2a9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/e6d26bc15b20469c06cac74299f223/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/e6d26bc15b20469c06cac74299f223/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9ee2f800cf4eef7201722e0cd85bb4/dna_s773.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/3c3e7c89f98501174f4f7570ba48f6/dna_s773.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: dna_s773.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.