Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/e0d1674fcabc8ec35caf1f141c25ba/dna_s756.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/004a12a7af3e1ecdb989b931a6b2a9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/ca25008939ca0111102c4894e373d7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/ca25008939ca0111102c4894e373d7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/b026658ee393588d80ad67774b35ce/dna_s756.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: dna_s756.Aligned.sortedByCoord.out.bam.bai