Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/1a724dd038c09ff7d78c115de9e7ce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/53af804381e3eae521f5a4f9552428/dna_s739.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/1a724dd038c09ff7d78c115de9e7ce/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/a30672179acce4a01fa13285075623/dna_s739.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: dna_s739.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1