Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/a10fbc87dbd6b81a20299c84f2ca44/659_cX2_T1_TRNA_1_B2372Y3LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/fdca6f169fd094ee2bdb7f69ed8fb6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/fdca6f169fd094ee2bdb7f69ed8fb6/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory