.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (dna_s775)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/d907306747de30c323d0e10ab0d333/.command.err
Size: 32.5 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (dna_s775)
Attempt
Content

-ctat genome lib [/tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.x9YT2HSNW6/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary
-sample contains 115055067 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir  -J /tmp/nxf.x9YT2HSNW6/dna_s775.Chimeric.out.junction  -O /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.x9YT2HSNW6/dna_s775.Chimeric.out.junction
-building interval tree based on /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=46153.85/min 
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[640000], rate=54160.79/min -building interval tree based on /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=66666.67/min 
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[640000], rate=53038.67/min -building interval tree based on /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[640000], rate=51962.11/min -building interval tree based on /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=120000.00/min 
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[640000], rate=48669.20/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 5000000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 5250000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4909090.91 reads per min processed...  
 5000000.00 reads per min processed...  
 5076923.08 reads per min processed...  
 5142857.14 reads per min processed...  
 5200000.00 reads per min processed...  
 5250000.00 reads per min processed...  
 5294117.65 reads per min processed...  
 5052631.58 reads per min processed...  
 5100000.00 reads per min processed...  
 5142857.14 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.x9YT2HSNW6/dna_s775.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -137736.395448
EM: Round [1] log likelihood: -137640.456875
EM: Round [2] log likelihood: -137614.759908
EM: Round [3] log likelihood: -137604.260315
EM: Round [4] log likelihood: -137598.813363
EM: Round [5] log likelihood: -137595.575318
EM: Round [6] log likelihood: -137593.475834
EM: Round [7] log likelihood: -137592.028128
EM: Round [8] log likelihood: -137590.981728
EM: Round [9] log likelihood: -137590.196278
EM: Round [10] log likelihood: -137589.588019
EM: Round [11] log likelihood: -137589.104476
EM: Round [12] log likelihood: -137588.711475
EM: Round [13] log likelihood: -137588.386032
EM: Round [14] log likelihood: -137588.112251
EM: Round [15] log likelihood: -137587.878860
EM: Round [16] log likelihood: -137587.677679
EM: Round [17] log likelihood: -137587.502644
EM: Round [18] log likelihood: -137587.349169
EM: Round [19] log likelihood: -137587.213720
EM: Round [20] log likelihood: -137587.093525
EM: Round [21] log likelihood: -137586.986375
EM: Round [22] log likelihood: -137586.890483
EM: Round [23] log likelihood: -137586.804383
EM: Round [24] log likelihood: -137586.726858
EM: Round [25] log likelihood: -137586.656888
EM: Round [26] log likelihood: -137586.593606
EM: Round [27] log likelihood: -137586.536270
EM: Round [28] log likelihood: -137586.484242
EM: Round [29] log likelihood: -137586.436967
EM: Round [30] log likelihood: -137586.393959
EM: Round [31] log likelihood: -137586.354792
EM: Round [32] log likelihood: -137586.319090
EM: Round [33] log likelihood: -137586.286520
EM: Round [34] log likelihood: -137586.256784
EM: Round [35] log likelihood: -137586.229619
EM: Round [36] log likelihood: -137586.204785
EM: Round [37] log likelihood: -137586.182071
EM: Round [38] log likelihood: -137586.161286
EM: Round [39] log likelihood: -137586.142255
EM: Round [40] log likelihood: -137586.124825
EM: Round [41] log likelihood: -137586.108853
EM: Round [42] log likelihood: -137586.094211
EM: Round [43] log likelihood: -137586.080786
EM: Round [44] log likelihood: -137586.068470
EM: Round [45] log likelihood: -137586.057169
EM: Round [46] log likelihood: -137586.046796
EM: Round [47] log likelihood: -137586.037272
EM: Round [48] log likelihood: -137586.028525
EM: Round [49] log likelihood: -137586.020490
EM: Round [50] log likelihood: -137586.013106
EM: Round [51] log likelihood: -137586.006320
EM: Round [52] log likelihood: -137586.000081
EM: Round [53] log likelihood: -137585.994343
EM: Round [54] log likelihood: -137585.989066
EM: Round [55] log likelihood: -137585.984211
EM: Round [56] log likelihood: -137585.979743
EM: Round [57] log likelihood: -137585.975631
EM: Round [58] log likelihood: -137585.971845
EM: Round [59] log likelihood: -137585.968359
EM: Round [60] log likelihood: -137585.965149
EM: Round [61] log likelihood: -137585.962192
EM: Round [62] log likelihood: -137585.959467
EM: Round [63] log likelihood: -137585.956956
EM: Round [64] log likelihood: -137585.954641
EM: Round [65] log likelihood: -137585.952508
EM: Round [66] log likelihood: -137585.950540
EM: Round [67] log likelihood: -137585.948726
EM: Round [68] log likelihood: -137585.947052
EM: Round [69] log likelihood: -137585.945508
EM: Round [70] log likelihood: -137585.944082
EM: Round [71] log likelihood: -137585.942767
EM: Round [72] log likelihood: -137585.941553
EM: Round [73] log likelihood: -137585.940432
EM: Round [74] log likelihood: -137585.939397
EM: Round [75] log likelihood: -137585.938441
EM: Round [76] log likelihood: -137585.937558
EM: Round [77] log likelihood: -137585.936742
EM: Round [78] log likelihood: -137585.935988
EM: Round [79] log likelihood: -137585.935291
EM: Round [80] log likelihood: -137585.934646
EM: Round [81] log likelihood: -137585.934050
EM: Round [82] log likelihood: -137585.933500
EM: Round [83] log likelihood: -137585.932990
EM: Round [84] log likelihood: -137585.932519
EM: Round [85] log likelihood: -137585.932083
EM: Round [86] log likelihood: -137585.931679
EM: Round [87] log likelihood: -137585.931306
EM: Round [88] log likelihood: -137585.930960
EM: Round [89] log likelihood: -137585.930640
EM: Round [90] log likelihood: -137585.930343
EM: Round [91] log likelihood: -137585.930069
EM: Round [92] log likelihood: -137585.929815
EM: Round [93] log likelihood: -137585.929579
EM: Round [94] log likelihood: -137585.929361
EM: Round [95] log likelihood: -137585.929159
EM: Round [96] log likelihood: -137585.928971
EM: Round [97] log likelihood: -137585.928798
EM: Round [98] log likelihood: -137585.928636
EM: Round [99] log likelihood: -137585.928487
EM: Round [100] log likelihood: -137585.928348
EM: Round [101] log likelihood: -137585.928220
EM: Round [102] log likelihood: -137585.928101
EM: Round [103] log likelihood: -137585.927990
EM: Round [104] log likelihood: -137585.927887
EM: Round [105] log likelihood: -137585.927792
EM: Stopping iterations at round 105 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -137724.333486
EM: Round [1] log likelihood: -137632.596921
EM: Round [2] log likelihood: -137608.934558
EM: Round [3] log likelihood: -137599.689298
EM: Round [4] log likelihood: -137595.119238
EM: Round [5] log likelihood: -137592.523843
EM: Round [6] log likelihood: -137590.906781
EM: Round [7] log likelihood: -137589.828345
EM: Round [8] log likelihood: -137589.070141
EM: Round [9] log likelihood: -137588.514141
EM: Round [10] log likelihood: -137588.092298
EM: Round [11] log likelihood: -137587.763263
EM: Round [12] log likelihood: -137587.500763
EM: Round [13] log likelihood: -137587.287439
EM: Round [14] log likelihood: -137587.111414
EM: Round [15] log likelihood: -137586.964313
EM: Round [16] log likelihood: -137586.840067
EM: Round [17] log likelihood: -137586.734174
EM: Round [18] log likelihood: -137586.643225
EM: Round [19] log likelihood: -137586.564589
EM: Round [20] log likelihood: -137586.496206
EM: Round [21] log likelihood: -137586.436439
EM: Round [22] log likelihood: -137586.383971
EM: Round [23] log likelihood: -137586.337728
EM: Round [24] log likelihood: -137586.296832
EM: Round [25] log likelihood: -137586.260551
EM: Round [26] log likelihood: -137586.228275
EM: Round [27] log likelihood: -137586.199491
EM: Round [28] log likelihood: -137586.173763
EM: Round [29] log likelihood: -137586.150720
EM: Round [30] log likelihood: -137586.130044
EM: Round [31] log likelihood: -137586.111459
EM: Round [32] log likelihood: -137586.094730
EM: Round [33] log likelihood: -137586.079649
EM: Round [34] log likelihood: -137586.066036
EM: Round [35] log likelihood: -137586.053734
EM: Round [36] log likelihood: -137586.042603
EM: Round [37] log likelihood: -137586.032522
EM: Round [38] log likelihood: -137586.023383
EM: Round [39] log likelihood: -137586.015091
EM: Round [40] log likelihood: -137586.007559
EM: Round [41] log likelihood: -137586.000714
EM: Round [42] log likelihood: -137585.994487
EM: Round [43] log likelihood: -137585.988819
EM: Round [44] log likelihood: -137585.983655
EM: Round [45] log likelihood: -137585.978948
EM: Round [46] log likelihood: -137585.974654
EM: Round [47] log likelihood: -137585.970735
EM: Round [48] log likelihood: -137585.967156
EM: Round [49] log likelihood: -137585.963885
EM: Round [50] log likelihood: -137585.960895
EM: Round [51] log likelihood: -137585.958159
EM: Round [52] log likelihood: -137585.955654
EM: Round [53] log likelihood: -137585.953360
EM: Round [54] log likelihood: -137585.951258
EM: Round [55] log likelihood: -137585.949331
EM: Round [56] log likelihood: -137585.947564
EM: Round [57] log likelihood: -137585.945942
EM: Round [58] log likelihood: -137585.944452
EM: Round [59] log likelihood: -137585.943084
EM: Round [60] log likelihood: -137585.941827
EM: Round [61] log likelihood: -137585.940671
EM: Round [62] log likelihood: -137585.939607
EM: Round [63] log likelihood: -137585.938628
EM: Round [64] log likelihood: -137585.937727
EM: Round [65] log likelihood: -137585.936897
EM: Round [66] log likelihood: -137585.936132
EM: Round [67] log likelihood: -137585.935427
EM: Round [68] log likelihood: -137585.934777
EM: Round [69] log likelihood: -137585.934176
EM: Round [70] log likelihood: -137585.933622
EM: Round [71] log likelihood: -137585.933111
EM: Round [72] log likelihood: -137585.932638
EM: Round [73] log likelihood: -137585.932201
EM: Round [74] log likelihood: -137585.931798
EM: Round [75] log likelihood: -137585.931424
EM: Round [76] log likelihood: -137585.931078
EM: Round [77] log likelihood: -137585.930758
EM: Round [78] log likelihood: -137585.930462
EM: Round [79] log likelihood: -137585.930188
EM: Round [80] log likelihood: -137585.929934
EM: Round [81] log likelihood: -137585.929698
EM: Round [82] log likelihood: -137585.929479
EM: Round [83] log likelihood: -137585.929277
EM: Round [84] log likelihood: -137585.929088
EM: Round [85] log likelihood: -137585.928914
EM: Round [86] log likelihood: -137585.928752
EM: Round [87] log likelihood: -137585.928601
EM: Round [88] log likelihood: -137585.928461
EM: Round [89] log likelihood: -137585.928331
EM: Round [90] log likelihood: -137585.928210
EM: Round [91] log likelihood: -137585.928097
EM: Round [92] log likelihood: -137585.927993
EM: Round [93] log likelihood: -137585.927895
EM: Stopping iterations at round 93 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 115055067 > /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir > /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir --annotate /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir
-done, see /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 278, filtered: 10827)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.x9YT2HSNW6/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.x9YT2HSNW6/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000266904.6]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000213205.3]
WARNING, no entry stored in dbm for [ENSG00000270788.1]
WARNING, no entry stored in dbm for [ENSG00000249274.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000230023.2]
WARNING, no entry stored in dbm for [ENSG00000250822.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000213280.2]
WARNING, no entry stored in dbm for [ENSG00000267408.1]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000257612.2]
WARNING, no entry stored in dbm for [ENSG00000286271.2]
WARNING, no entry stored in dbm for [ENSG00000260528.5]
WARNING, no entry stored in dbm for [ENSG00000285803.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000215386.13]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000233747.1]
WARNING, no entry stored in dbm for [ENSG00000231427.6]
WARNING, no entry stored in dbm for [ENSG00000219665.8]
WARNING, no entry stored in dbm for [ENSG00000280383.1]
WARNING, no entry stored in dbm for [ENSG00000197558.13]
WARNING, no entry stored in dbm for [ENSG00000249073.1]
WARNING, no entry stored in dbm for [ENSG00000260776.6]
WARNING, no entry stored in dbm for [ENSG00000257052.1]
WARNING, no entry stored in dbm for [ENSG00000213411.2]
WARNING, no entry stored in dbm for [ENSG00000242435.1]
WARNING, no entry stored in dbm for [ENSG00000248671.8]
WARNING, no entry stored in dbm for [ENSG00000200432.1]
WARNING, no entry stored in dbm for [ENSG00000233017.3]
WARNING, no entry stored in dbm for [ENSG00000285935.1]
WARNING, no entry stored in dbm for [ENSG00000286147.1]
WARNING, no entry stored in dbm for [ENSG00000234405.2]
WARNING, no entry stored in dbm for [ENSG00000231527.7]
WARNING, no entry stored in dbm for [ENSG00000240023.1]
WARNING, no entry stored in dbm for [ENSG00000256686.1]
WARNING, no entry stored in dbm for [ENSG00000225259.4]
WARNING, no entry stored in dbm for [ENSG00000237689.1]
WARNING, no entry stored in dbm for [ENSG00000222042.2]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000279190.1]
WARNING, no entry stored in dbm for [ENSG00000161103.11]
WARNING, no entry stored in dbm for [ENSG00000235885.8]
WARNING, no entry stored in dbm for [ENSG00000234981.1]
WARNING, no entry stored in dbm for [ENSG00000280042.1]
WARNING, no entry stored in dbm for [ENSG00000213655.4]
WARNING, no entry stored in dbm for [ENSG00000267322.2]
WARNING, no entry stored in dbm for [ENSG00000243323.7]
WARNING, no entry stored in dbm for [ENSG00000215867.4]
WARNING, no entry stored in dbm for [ENSG00000255440.2]
WARNING, no entry stored in dbm for [ENSG00000234696.1]
WARNING, no entry stored in dbm for [ENSG00000287289.1]
WARNING, no entry stored in dbm for [ENSG00000203560.3]
WARNING, no entry stored in dbm for [ENSG00000176748.6]
WARNING, no entry stored in dbm for [ENSG00000232907.8]
WARNING, no entry stored in dbm for [ENSG00000257137.7]
WARNING, no entry stored in dbm for [ENSG00000212100.2]
WARNING, no entry stored in dbm for [ENSG00000258128.2]
WARNING, no entry stored in dbm for [ENSG00000249816.7]
WARNING, no entry stored in dbm for [ENSG00000248281.1]
WARNING, no entry stored in dbm for [ENSG00000228882.1]
WARNING, no entry stored in dbm for [ENSG00000226450.2]
WARNING, no entry stored in dbm for [ENSG00000229000.1]
WARNING, no entry stored in dbm for [ENSG00000250508.1]
WARNING, no entry stored in dbm for [ENSG00000233431.1]
WARNING, no entry stored in dbm for [ENSG00000230866.2]
WARNING, no entry stored in dbm for [ENSG00000228799.6]
WARNING, no entry stored in dbm for [ENSG00000234551.2]
WARNING, no entry stored in dbm for [ENSG00000258735.1]
WARNING, no entry stored in dbm for [ENSG00000213500.3]
WARNING, no entry stored in dbm for [ENSG00000248313.1]
WARNING, no entry stored in dbm for [ENSG00000213212.3]
WARNING, no entry stored in dbm for [ENSG00000255262.3]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000279080.1]
WARNING, no entry stored in dbm for [ENSG00000261523.1]
WARNING, no entry stored in dbm for [ENSG00000261523.1]
WARNING, no entry stored in dbm for [ENSG00000285758.2]
WARNING, no entry stored in dbm for [ENSG00000274919.1]
WARNING, no entry stored in dbm for [ENSG00000230368.2]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000233581.1]
WARNING, no entry stored in dbm for [ENSG00000234028.3]
WARNING, no entry stored in dbm for [ENSG00000287171.1]
WARNING, no entry stored in dbm for [ENSG00000231079.7]
WARNING, no entry stored in dbm for [ENSG00000248724.6]
WARNING, no entry stored in dbm for [ENSG00000233776.5]
WARNING, no entry stored in dbm for [ENSG00000271162.1]
WARNING, no entry stored in dbm for [ENSG00000258661.1]
WARNING, no entry stored in dbm for [ENSG00000278931.1]
WARNING, no entry stored in dbm for [ENSG00000233002.2]
WARNING, no entry stored in dbm for [ENSG00000228409.6]
WARNING, no entry stored in dbm for [ENSG00000248103.1]
WARNING, no entry stored in dbm for [ENSG00000228294.6]
WARNING, no entry stored in dbm for [ENSG00000249207.2]
WARNING, no entry stored in dbm for [ENSG00000235062.4]
WARNING, no entry stored in dbm for [ENSG00000204959.4]
WARNING, no entry stored in dbm for [ENSG00000286512.1]
WARNING, no entry stored in dbm for [ENSG00000251396.7]
WARNING, no entry stored in dbm for [ENSG00000268635.2]
WARNING, no entry stored in dbm for [ENSG00000229473.2]
WARNING, no entry stored in dbm for [ENSG00000286735.1]
WARNING, no entry stored in dbm for [ENSG00000237422.2]
WARNING, no entry stored in dbm for [ENSG00000230927.3]
WARNING, no entry stored in dbm for [ENSG00000283078.1]
WARNING, no entry stored in dbm for [ENSG00000277304.1]
WARNING, no entry stored in dbm for [ENSG00000270955.1]
WARNING, no entry stored in dbm for [ENSG00000271155.1]
WARNING, no entry stored in dbm for [ENSG00000282221.1]
WARNING, no entry stored in dbm for [ENSG00000267098.2]
WARNING, no entry stored in dbm for [ENSG00000253483.1]
WARNING, no entry stored in dbm for [ENSG00000253483.1]
WARNING, no entry stored in dbm for [ENSG00000253483.1]
WARNING, no entry stored in dbm for [ENSG00000266283.1]
WARNING, no entry stored in dbm for [ENSG00000263588.1]
WARNING, no entry stored in dbm for [ENSG00000254398.1]
WARNING, no entry stored in dbm for [ENSG00000254398.1]
WARNING, no entry stored in dbm for [ENSG00000227574.2]
WARNING, no entry stored in dbm for [ENSG00000254092.2]
WARNING, no entry stored in dbm for [ENSG00000233109.4]
WARNING, no entry stored in dbm for [ENSG00000268015.1]
WARNING, no entry stored in dbm for [ENSG00000249042.6]
WARNING, no entry stored in dbm for [ENSG00000287360.1]
WARNING, no entry stored in dbm for [ENSG00000213798.3]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000261687.1]
WARNING, no entry stored in dbm for [IGL-.g@-ext]


	* STAR-Fusion complete.  See output: /tmp/nxf.x9YT2HSNW6/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)