.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (659_beZ_T1_TRNA_2_B2372Y3LT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e3c92d8188f023a4d0748735521011/.command.sh
Size: 191 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (659_beZ_T1_TRNA_2_B2372Y3LT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "659_beZ_T1_TRNA_2_B2372Y3LT4_1.md.bam" > 659_beZ_T1_TRNA_2_B2372Y3LT4_1_full_bam_saturation_values.txt