.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (659_yV_T1_TRNA_1_B2372Y3LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/ced9b6c6559cf8fce9c6bc91e1960e/.command.log
Size: 935 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (659_yV_T1_TRNA_1_B2372Y3LT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/bc05f2abcf8b7c8711af14ee7226a6/659_yV_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/004a12a7af3e1ecdb989b931a6b2a9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/ced9b6c6559cf8fce9c6bc91e1960e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/ced9b6c6559cf8fce9c6bc91e1960e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/c10bda47c9b395d50bfc49c1a4efeb/659_yV_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_yV_T1_TRNA_1_B2372Y3LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Total 200000 usable reads were sampled