File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/78dc97c75238bcbf15fc6ac8d5621f/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:07:41Z thread 482 Sample sheet being processed by common lib? Yes
2026-06-08T06:07:41Z thread 482 SampleSheet Settings: 
2026-06-08T06:07:41Z thread 482   FastqCompressionFormat = gzip
2026-06-08T06:07:41Z thread 482   NoLaneSplitting = FALSE
2026-06-08T06:07:41Z thread 482   OverrideCycles = Y151;I8;I8;Y151
2026-06-08T06:07:41Z thread 482   SoftwareVersion = 4.3.6
2026-06-08T06:07:41Z thread 482 
2026-06-08T06:07:41Z thread 482 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:07:41Z thread 482 shared-thread-linux-native-asio output is disabled
2026-06-08T06:07:41Z thread 482 bcl-convert Version 4.4.6
2026-06-08T06:07:41Z thread 482 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:07:41Z thread 482 Command Line: --tiles s_6 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:07:41Z thread 482 Conversion Begins.
2026-06-08T06:07:41Z thread 482 Input BCL Information:
2026-06-08T06:07:41Z thread 482     Read Structure: 2026-06-08T06:07:41Z thread 482 Y1512026-06-08T06:07:41Z thread 482 ;2026-06-08T06:07:41Z thread 482 I82026-06-08T06:07:41Z thread 482 ;2026-06-08T06:07:41Z thread 482 I82026-06-08T06:07:41Z thread 482 ;2026-06-08T06:07:41Z thread 482 Y1512026-06-08T06:07:41Z thread 482 
2026-06-08T06:07:41Z thread 482     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:07:41Z thread 482     BCL file format: cbcl
2026-06-08T06:07:41Z thread 482     Positions file format: slocs
2026-06-08T06:07:41Z thread 482     Filter file format: filter
2026-06-08T06:07:41Z thread 482 Conversion Information:
2026-06-08T06:07:41Z thread 482     Tile filtering: converting 784/6272 tiles
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 1: 48
2026-06-08T06:07:41Z thread 482     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 2: 48
2026-06-08T06:07:41Z thread 482     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 3: 48
2026-06-08T06:07:41Z thread 482     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 4: 48
2026-06-08T06:07:41Z thread 482     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 5: 24
2026-06-08T06:07:41Z thread 482     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 6: 24
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 7: 24
2026-06-08T06:07:41Z thread 482     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Sample Count for Lane 8: 24
2026-06-08T06:07:41Z thread 482     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:07:41Z thread 482     Expected number of sample FASTQ files to be created: 48
2026-06-08T06:07:41Z thread 482 # CPU hw threads available: 64
2026-06-08T06:07:41Z thread 482 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:07:41Z thread 482 SW compressors: 64
2026-06-08T06:07:41Z thread 482 SW decompressors: 32
2026-06-08T06:07:41Z thread 482 SW FASTQ compression level: 1
2026-06-08T06:33:05Z thread 482 Lane 6 Post-run Information:
2026-06-08T06:33:05Z thread 482     Total clusters: 4080649153
2026-06-08T06:33:05Z thread 482     Total Genomic Reads: 8161298306
2026-06-08T06:33:05Z thread 482     Total Genomic Input Gigabases 1232.36
2026-06-08T06:33:05Z thread 482     Minimum reads for a sample: 233672516
2026-06-08T06:33:05Z thread 482     Maximum reads for a sample: 484475822
2026-06-08T06:33:05Z thread 482     Average reads per sample: 324260117.58
2026-06-08T06:33:05Z thread 482     Undetermined reads: 379055484
2026-06-08T06:33:06Z thread 482 Conversion Complete.