.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s731)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/e6d42f4fafb1fc7226537391a95d64/.command.sh
Size: 509 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (dna_s731)
Attempt

Content

#!/bin/bash -euo pipefail
cat dna_s731_S1_L001_R1_001.fastq.gz dna_s731_S1_L002_R1_001.fastq.gz dna_s731_S1_L003_R1_001.fastq.gz dna_s731_S1_L004_R1_001.fastq.gz > dna_s731_R1.fastq.gz
cat dna_s731_S1_L001_R2_001.fastq.gz dna_s731_S1_L002_R2_001.fastq.gz dna_s731_S1_L003_R2_001.fastq.gz dna_s731_S1_L004_R2_001.fastq.gz > dna_s731_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS