File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/08062abddddca5780db9b73623514d/.command.err
Size
34.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (dna_s755)
Attempt

Content

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-ctat genome lib [/tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.676gxGCrrL/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.676gxGCrrL/./star-fusion.preliminary
-sample contains 138229501 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir  -J /tmp/nxf.676gxGCrrL/dna_s755.Chimeric.out.junction  -O /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.676gxGCrrL/dna_s755.Chimeric.out.junction
-building interval tree based on /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[740000], rate=49278.58/min -building interval tree based on /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[740000], rate=47334.75/min -building interval tree based on /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[740000], rate=46589.72/min -building interval tree based on /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[740000], rate=45491.80/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 5000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4666666.67 reads per min processed...  
 4800000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4615384.62 reads per min processed...  
 4400000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4588235.29 reads per min processed...  
 4666666.67 reads per min processed...  
 4500000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4636363.64 reads per min processed...  
 4695652.17 reads per min processed...  
 4750000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4666666.67 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.676gxGCrrL/dna_s755.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -175776.197697
EM: Round [1] log likelihood: -175679.964391
EM: Round [2] log likelihood: -175651.363861
EM: Round [3] log likelihood: -175638.918378
EM: Round [4] log likelihood: -175632.533154
EM: Round [5] log likelihood: -175629.000646
EM: Round [6] log likelihood: -175626.959993
EM: Round [7] log likelihood: -175625.740110
EM: Round [8] log likelihood: -175624.987357
EM: Round [9] log likelihood: -175624.508755
EM: Round [10] log likelihood: -175624.195850
EM: Round [11] log likelihood: -175623.985856
EM: Round [12] log likelihood: -175623.841369
EM: Round [13] log likelihood: -175623.739521
EM: Round [14] log likelihood: -175623.665999
EM: Round [15] log likelihood: -175623.611659
EM: Round [16] log likelihood: -175623.570552
EM: Round [17] log likelihood: -175623.538741
EM: Round [18] log likelihood: -175623.513577
EM: Round [19] log likelihood: -175623.493253
EM: Round [20] log likelihood: -175623.476516
EM: Round [21] log likelihood: -175623.462486
EM: Round [22] log likelihood: -175623.450536
EM: Round [23] log likelihood: -175623.440211
EM: Round [24] log likelihood: -175623.431178
EM: Round [25] log likelihood: -175623.423188
EM: Round [26] log likelihood: -175623.416055
EM: Round [27] log likelihood: -175623.409634
EM: Round [28] log likelihood: -175623.403814
EM: Round [29] log likelihood: -175623.398507
EM: Round [30] log likelihood: -175623.393644
EM: Round [31] log likelihood: -175623.389167
EM: Round [32] log likelihood: -175623.385031
EM: Round [33] log likelihood: -175623.381197
EM: Round [34] log likelihood: -175623.377633
EM: Round [35] log likelihood: -175623.374312
EM: Round [36] log likelihood: -175623.371212
EM: Round [37] log likelihood: -175623.368312
EM: Round [38] log likelihood: -175623.365595
EM: Round [39] log likelihood: -175623.363047
EM: Round [40] log likelihood: -175623.360654
EM: Round [41] log likelihood: -175623.358404
EM: Round [42] log likelihood: -175623.356287
EM: Round [43] log likelihood: -175623.354293
EM: Round [44] log likelihood: -175623.352414
EM: Round [45] log likelihood: -175623.350643
EM: Round [46] log likelihood: -175623.348972
EM: Round [47] log likelihood: -175623.347394
EM: Round [48] log likelihood: -175623.345905
EM: Round [49] log likelihood: -175623.344498
EM: Round [50] log likelihood: -175623.343169
EM: Round [51] log likelihood: -175623.341912
EM: Round [52] log likelihood: -175623.340724
EM: Round [53] log likelihood: -175623.339601
EM: Round [54] log likelihood: -175623.338539
EM: Round [55] log likelihood: -175623.337535
EM: Round [56] log likelihood: -175623.336584
EM: Round [57] log likelihood: -175623.335685
EM: Round [58] log likelihood: -175623.334834
EM: Round [59] log likelihood: -175623.334029
EM: Round [60] log likelihood: -175623.333267
EM: Round [61] log likelihood: -175623.332545
EM: Round [62] log likelihood: -175623.331862
EM: Round [63] log likelihood: -175623.331216
EM: Round [64] log likelihood: -175623.330604
EM: Round [65] log likelihood: -175623.330024
EM: Round [66] log likelihood: -175623.329476
EM: Round [67] log likelihood: -175623.328956
EM: Round [68] log likelihood: -175623.328465
EM: Round [69] log likelihood: -175623.327999
EM: Round [70] log likelihood: -175623.327558
EM: Round [71] log likelihood: -175623.327140
EM: Round [72] log likelihood: -175623.326745
EM: Round [73] log likelihood: -175623.326370
EM: Round [74] log likelihood: -175623.326016
EM: Round [75] log likelihood: -175623.325680
EM: Round [76] log likelihood: -175623.325362
EM: Round [77] log likelihood: -175623.325061
EM: Round [78] log likelihood: -175623.324776
EM: Round [79] log likelihood: -175623.324505
EM: Round [80] log likelihood: -175623.324250
EM: Round [81] log likelihood: -175623.324007
EM: Round [82] log likelihood: -175623.323778
EM: Round [83] log likelihood: -175623.323560
EM: Round [84] log likelihood: -175623.323355
EM: Round [85] log likelihood: -175623.323160
EM: Round [86] log likelihood: -175623.322975
EM: Round [87] log likelihood: -175623.322800
EM: Round [88] log likelihood: -175623.322634
EM: Round [89] log likelihood: -175623.322478
EM: Round [90] log likelihood: -175623.322329
EM: Round [91] log likelihood: -175623.322188
EM: Round [92] log likelihood: -175623.322055
EM: Round [93] log likelihood: -175623.321929
EM: Round [94] log likelihood: -175623.321809
EM: Round [95] log likelihood: -175623.321696
EM: Round [96] log likelihood: -175623.321589
EM: Round [97] log likelihood: -175623.321487
EM: Round [98] log likelihood: -175623.321391
EM: Stopping iterations at round 98 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -175740.423097
EM: Round [1] log likelihood: -175651.728497
EM: Round [2] log likelihood: -175627.306109
EM: Round [3] log likelihood: -175617.497760
EM: Round [4] log likelihood: -175612.822985
EM: Round [5] log likelihood: -175610.369810
EM: Round [6] log likelihood: -175608.993797
EM: Round [7] log likelihood: -175608.180492
EM: Round [8] log likelihood: -175607.678134
EM: Round [9] log likelihood: -175607.355682
EM: Round [10] log likelihood: -175607.141479
EM: Round [11] log likelihood: -175606.994667
EM: Round [12] log likelihood: -175606.891088
EM: Round [13] log likelihood: -175606.815998
EM: Round [14] log likelihood: -175606.760142
EM: Round [15] log likelihood: -175606.717564
EM: Round [16] log likelihood: -175606.684343
EM: Round [17] log likelihood: -175606.657848
EM: Round [18] log likelihood: -175606.636278
EM: Round [19] log likelihood: -175606.618382
EM: Round [20] log likelihood: -175606.603277
EM: Round [21] log likelihood: -175606.590329
EM: Round [22] log likelihood: -175606.579075
EM: Round [23] log likelihood: -175606.569177
EM: Round [24] log likelihood: -175606.560378
EM: Round [25] log likelihood: -175606.552487
EM: Round [26] log likelihood: -175606.545355
EM: Round [27] log likelihood: -175606.538866
EM: Round [28] log likelihood: -175606.532928
EM: Round [29] log likelihood: -175606.527470
EM: Round [30] log likelihood: -175606.522431
EM: Round [31] log likelihood: -175606.517764
EM: Round [32] log likelihood: -175606.513427
EM: Round [33] log likelihood: -175606.509389
EM: Round [34] log likelihood: -175606.505619
EM: Round [35] log likelihood: -175606.502093
EM: Round [36] log likelihood: -175606.498791
EM: Round [37] log likelihood: -175606.495693
EM: Round [38] log likelihood: -175606.492784
EM: Round [39] log likelihood: -175606.490049
EM: Round [40] log likelihood: -175606.487476
EM: Round [41] log likelihood: -175606.485053
EM: Round [42] log likelihood: -175606.482769
EM: Round [43] log likelihood: -175606.480616
EM: Round [44] log likelihood: -175606.478585
EM: Round [45] log likelihood: -175606.476668
EM: Round [46] log likelihood: -175606.474857
EM: Round [47] log likelihood: -175606.473147
EM: Round [48] log likelihood: -175606.471531
EM: Round [49] log likelihood: -175606.470003
EM: Round [50] log likelihood: -175606.468559
EM: Round [51] log likelihood: -175606.467194
EM: Round [52] log likelihood: -175606.465902
EM: Round [53] log likelihood: -175606.464680
EM: Round [54] log likelihood: -175606.463524
EM: Round [55] log likelihood: -175606.462431
EM: Round [56] log likelihood: -175606.461395
EM: Round [57] log likelihood: -175606.460415
EM: Round [58] log likelihood: -175606.459488
EM: Round [59] log likelihood: -175606.458610
EM: Round [60] log likelihood: -175606.457778
EM: Round [61] log likelihood: -175606.456991
EM: Round [62] log likelihood: -175606.456246
EM: Round [63] log likelihood: -175606.455540
EM: Round [64] log likelihood: -175606.454871
EM: Round [65] log likelihood: -175606.454238
EM: Round [66] log likelihood: -175606.453639
EM: Round [67] log likelihood: -175606.453071
EM: Round [68] log likelihood: -175606.452533
EM: Round [69] log likelihood: -175606.452024
EM: Round [70] log likelihood: -175606.451541
EM: Round [71] log likelihood: -175606.451084
EM: Round [72] log likelihood: -175606.450651
EM: Round [73] log likelihood: -175606.450241
EM: Round [74] log likelihood: -175606.449853
EM: Round [75] log likelihood: -175606.449485
EM: Round [76] log likelihood: -175606.449136
EM: Round [77] log likelihood: -175606.448806
EM: Round [78] log likelihood: -175606.448493
EM: Round [79] log likelihood: -175606.448196
EM: Round [80] log likelihood: -175606.447915
EM: Round [81] log likelihood: -175606.447649
EM: Round [82] log likelihood: -175606.447397
EM: Round [83] log likelihood: -175606.447158
EM: Round [84] log likelihood: -175606.446932
EM: Round [85] log likelihood: -175606.446717
EM: Round [86] log likelihood: -175606.446514
EM: Round [87] log likelihood: -175606.446322
EM: Round [88] log likelihood: -175606.446139
EM: Round [89] log likelihood: -175606.445967
EM: Round [90] log likelihood: -175606.445803
EM: Round [91] log likelihood: -175606.445648
EM: Round [92] log likelihood: -175606.445501
EM: Round [93] log likelihood: -175606.445362
EM: Round [94] log likelihood: -175606.445230
EM: Round [95] log likelihood: -175606.445105
EM: Round [96] log likelihood: -175606.444986
EM: Round [97] log likelihood: -175606.444874
EM: Round [98] log likelihood: -175606.444768
EM: Round [99] log likelihood: -175606.444667
EM: Round [100] log likelihood: -175606.444571
EM: Stopping iterations at round 100 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 138229501 > /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir > /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir --annotate /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir
-done, see /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 307, filtered: 12970)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.676gxGCrrL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.676gxGCrrL/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000260528.5]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000213205.3]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000270788.1]
WARNING, no entry stored in dbm for [ENSG00000249274.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000258741.4]
WARNING, no entry stored in dbm for [ENSG00000234861.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000227534.1]
WARNING, no entry stored in dbm for [ENSG00000223694.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000258488.2]
WARNING, no entry stored in dbm for [ENSG00000285572.2]
WARNING, no entry stored in dbm for [ENSG00000235885.8]
WARNING, no entry stored in dbm for [ENSG00000235831.7]
WARNING, no entry stored in dbm for [ENSG00000180663.5]
WARNING, no entry stored in dbm for [ENSG00000180663.5]
WARNING, no entry stored in dbm for [ENSG00000180663.5]
WARNING, no entry stored in dbm for [ENSG00000279905.1]
WARNING, no entry stored in dbm for [ENSG00000245248.8]
WARNING, no entry stored in dbm for [ENSG00000176728.10]
WARNING, no entry stored in dbm for [ENSG00000260840.2]
WARNING, no entry stored in dbm for [ENSG00000282416.1]
WARNING, no entry stored in dbm for [ENSG00000213650.3]
WARNING, no entry stored in dbm for [ENSG00000255949.1]
WARNING, no entry stored in dbm for [ENSG00000239877.3]
WARNING, no entry stored in dbm for [ENSG00000237689.1]
WARNING, no entry stored in dbm for [ENSG00000244128.7]
WARNING, no entry stored in dbm for [ENSG00000224078.15]
WARNING, no entry stored in dbm for [ENSG00000275120.3]
WARNING, no entry stored in dbm for [ENSG00000285803.1]
WARNING, no entry stored in dbm for [ENSG00000240853.3]
WARNING, no entry stored in dbm for [ENSG00000242650.3]
WARNING, no entry stored in dbm for [ENSG00000161103.11]
WARNING, no entry stored in dbm for [ENSG00000285847.2]
WARNING, no entry stored in dbm for [ENSG00000238837.3]
WARNING, no entry stored in dbm for [ENSG00000238837.3]
WARNING, no entry stored in dbm for [ENSG00000286238.1]
WARNING, no entry stored in dbm for [ENSG00000286238.1]
WARNING, no entry stored in dbm for [ENSG00000100181.22]
WARNING, no entry stored in dbm for [ENSG00000233321.2]
WARNING, no entry stored in dbm for [ENSG00000287920.1]
WARNING, no entry stored in dbm for [ENSG00000254266.6]
WARNING, no entry stored in dbm for [ENSG00000267470.6]
WARNING, no entry stored in dbm for [ENSG00000203560.3]
WARNING, no entry stored in dbm for [ENSG00000176748.6]
WARNING, no entry stored in dbm for [ENSG00000204876.4]
WARNING, no entry stored in dbm for [ENSG00000269904.2]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000234028.3]
WARNING, no entry stored in dbm for [ENSG00000251324.1]
WARNING, no entry stored in dbm for [ENSG00000254543.1]
WARNING, no entry stored in dbm for [ENSG00000263744.1]
WARNING, no entry stored in dbm for [ENSG00000279500.1]
WARNING, no entry stored in dbm for [ENSG00000258278.2]
WARNING, no entry stored in dbm for [ENSG00000258171.2]
WARNING, no entry stored in dbm for [ENSG00000186960.12]
WARNING, no entry stored in dbm for [ENSG00000229373.9]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000214856.11]
WARNING, no entry stored in dbm for [ENSG00000225249.6]
WARNING, no entry stored in dbm for [ENSG00000285758.2]
WARNING, no entry stored in dbm for [ENSG00000272888.7]
WARNING, no entry stored in dbm for [ENSG00000216636.1]
WARNING, no entry stored in dbm for [ENSG00000242094.1]
WARNING, no entry stored in dbm for [ENSG00000254894.1]
WARNING, no entry stored in dbm for [ENSG00000237914.5]
WARNING, no entry stored in dbm for [ENSG00000283138.1]
WARNING, no entry stored in dbm for [ENSG00000257501.6]
WARNING, no entry stored in dbm for [ENSG00000248429.5]
WARNING, no entry stored in dbm for [ENSG00000257159.1]
WARNING, no entry stored in dbm for [ENSG00000215349.2]
WARNING, no entry stored in dbm for [ENSG00000228432.1]
WARNING, no entry stored in dbm for [ENSG00000235823.3]
WARNING, no entry stored in dbm for [ENSG00000261644.2]
WARNING, no entry stored in dbm for [ENSG00000245694.10]
WARNING, no entry stored in dbm for [ENSG00000240449.1]
WARNING, no entry stored in dbm for [ENSG00000261963.3]
WARNING, no entry stored in dbm for [ENSG00000286599.1]
WARNING, no entry stored in dbm for [ENSG00000273828.2]
WARNING, no entry stored in dbm for [ENSG00000261963.3]
WARNING, no entry stored in dbm for [ENSG00000223770.5]
WARNING, no entry stored in dbm for [ENSG00000229106.1]
WARNING, no entry stored in dbm for [ENSG00000197023.6]
WARNING, no entry stored in dbm for [ENSG00000229106.1]
WARNING, no entry stored in dbm for [ENSG00000250442.1]
WARNING, no entry stored in dbm for [ENSG00000241134.3]
WARNING, no entry stored in dbm for [ENSG00000236922.10]
WARNING, no entry stored in dbm for [ENSG00000256637.7]
WARNING, no entry stored in dbm for [ENSG00000285077.2]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000224790.3]
WARNING, no entry stored in dbm for [ENSG00000214558.4]
WARNING, no entry stored in dbm for [ENSG00000226149.6]
WARNING, no entry stored in dbm for [ENSG00000213080.3]
WARNING, no entry stored in dbm for [ENSG00000255248.9]
WARNING, no entry stored in dbm for [ENSG00000286162.2]
WARNING, no entry stored in dbm for [ENSG00000235303.1]
WARNING, no entry stored in dbm for [ENSG00000201317.1]
WARNING, no entry stored in dbm for [ENSG00000279072.1]
WARNING, no entry stored in dbm for [ENSG00000279072.1]
WARNING, no entry stored in dbm for [ENSG00000279072.1]
WARNING, no entry stored in dbm for [ENSG00000279072.1]
WARNING, no entry stored in dbm for [ENSG00000279072.1]
WARNING, no entry stored in dbm for [ENSG00000279072.1]
WARNING, no entry stored in dbm for [ENSG00000231427.6]
WARNING, no entry stored in dbm for [ENSG00000233799.1]
WARNING, no entry stored in dbm for [ENSG00000261405.2]
WARNING, no entry stored in dbm for [ENSG00000259150.6]
WARNING, no entry stored in dbm for [ENSG00000228480.1]
WARNING, no entry stored in dbm for [ENSG00000250192.1]
WARNING, no entry stored in dbm for [ENSG00000287972.1]
WARNING, no entry stored in dbm for [ENSG00000256948.1]
WARNING, no entry stored in dbm for [ENSG00000263189.1]
WARNING, no entry stored in dbm for [ENSG00000196390.6]
WARNING, no entry stored in dbm for [ENSG00000247934.4]
WARNING, no entry stored in dbm for [ENSG00000254092.2]
WARNING, no entry stored in dbm for [ENSG00000228005.1]
WARNING, no entry stored in dbm for [ENSG00000239455.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000232642.2]
WARNING, no entry stored in dbm for [ENSG00000287498.1]
WARNING, no entry stored in dbm for [ENSG00000261770.1]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000248810.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000232536.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000229180.7]


	* STAR-Fusion complete.  See output: /tmp/nxf.676gxGCrrL/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)