Processes

NFCORE_RNAFUSION:GENERATE_SAMPLE_TYPE_MAP
1
DEMULTIPLEX:BCLCONVERT
8
DEMULTIPLEX:FLOWCELL_QC
1
DEMULTIPLEX:AGGREGATE_DEMUX_STATS
1
DEMULTIPLEX:CAT_FASTQ
97
DEMULTIPLEX:SAMPLESHEET_FROM_MERGED
1
RNAFUSION:FASTQC
97
TRIM_WORKFLOW:FASTP
97
TRIM_WORKFLOW:FASTQC_FOR_FASTP
97 2
RNAFUSION:KALLISTO_INDEX
1
RNAFUSION:KALLISTO_QUANT
97
RNAFUSION:KALLISTO_TO_TX2GENE_QC
97
RNAFUSION:KALLISTO_TO_MULTIQC
97
RNAFUSION:GTF2BED
1
FASTQ_ALIGN_STAR:STAR_ALIGNMENT
97 19
FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT
97
RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM
97
RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM
97
ARRIBA_WORKFLOW:ARRIBA
97
ARRIBA_WORKFLOW:ARRIBA_FILTER
97
STARFUSION_WORKFLOW:STARFUSION
97
STARFUSION_WORKFLOW:STARFUSION_FILTER
97
FUSIONREPORT_WORKFLOW:FUSIONREPORT
97
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
97
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
97
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
97
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
97
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
97
RNAFUSION:CANCER_INTRONS_TO_VCF
97
QC_WORKFLOW:GATK4_MARKDUPLICATES
97
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
97
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
97
BAM_RSEQC:RSEQC_BAMSTAT
97
BAM_RSEQC:RSEQC_INNERDISTANCE
97
BAM_RSEQC:RSEQC_INFEREXPERIMENT
97
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
97
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
97
BAM_RSEQC:RSEQC_READDISTRIBUTION
97
BAM_RSEQC:RSEQC_READDUPLICATION
97
QC_WORKFLOW:SEQTOOL_QC
97 2
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
97
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
97
QC_WORKFLOW:PRESEQ_LCEXTRAP
97
QC_WORKFLOW:PRESEQ_TO_MULTIQC
97
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
97
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
97
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
97
RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS
RNAFUSION:CONTAMINATION_TO_MULTIQC
97
RNAFUSION:MULTIQC
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
1
RNAFUSION:MULTIQC_EXTRACT_CONTROLS
1
RNAFUSION:RUN_LEVEL_INTERMEDIATE
1
RNAFUSION:RUN_LEVEL_METRICS
1