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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume e4336b2e-609e-4959-858b-07258fa8299c -name daq-altera-beds-1
Error Report
Error executing process > 'DAQ:CAT_FASTQ (dna_s1388)'
Caused by:
Process `DAQ:CAT_FASTQ (dna_s1388)` terminated with an error exit status (143)
Command executed:
cat dna_s1388_S46_L001_R1_001.fastq.gz dna_s1388_S46_L007_R1_001.fastq.gz dna_s1388_S46_L003_R1_001.fastq.gz dna_s1388_S46_L004_R1_001.fastq.gz dna_s1388_S46_L002_R1_001.fastq.gz dna_s1388_S46_L006_R1_001.fastq.gz dna_s1388_S46_L008_R1_001.fastq.gz dna_s1388_S46_L005_R1_001.fastq.gz > dna_s1388_R1.fastq.gz
cat dna_s1388_S46_L001_R2_001.fastq.gz dna_s1388_S46_L007_R2_001.fastq.gz dna_s1388_S46_L003_R2_001.fastq.gz dna_s1388_S46_L004_R2_001.fastq.gz dna_s1388_S46_L002_R2_001.fastq.gz dna_s1388_S46_L006_R2_001.fastq.gz dna_s1388_S46_L008_R2_001.fastq.gz dna_s1388_S46_L005_R2_001.fastq.gz > dna_s1388_R2.fastq.gz
cat <<-END_VERSIONS > versions.yml
"DAQ:CAT_FASTQ":
cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS
Command exit status:
143
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/29a63e09778724361bb724069bbca7
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/cat_fastq:1.2
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- e4336b2e-609e-4959-858b-07258fa8299c
- Source
- /app/main.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- Deleted (25.5 GB) by @abshah on 2026-05-29 11:55 AM. List of old outputs
- Submitted By
- abshah
- Resumed
- No
Cost and Runtime
- Status
- failed
- Outputs
- Deleted
- Started
- Jan 06, 2026 6:10 PM
- Completed
- Jan 06, 2026 7:00 PM
- Duration
- 49m 42s
- Post-workflow Transfer
- 8s
- Exit Status
- 143
- Peak Tasks / CPU / Mem
- 535 / 15,378 / 58.6 TB