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Sig_18_Blood_full_basic_stats.tsv
Full Path
s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/daq_exclude_controls/daq-exclude-ctrl-20260608-220255/reports/raw_qc/seqtool/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
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5.0 KB
Workflow Run
daq-exclude-ctrl-20260608-220255
Published
Jun 08, 2026 3:15 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.681791 0.318201 0.783822 0.216178 168 280 436 441978 0.999505 346432 95546 602981 281419 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed 27 0.006257 0.0 0.0 0.069771 0.027096 0.175076 0.356753 0.443925 0.726161 1.51338 0.953493 1.31308 0.918378 0.816403 0.820774 1.238939 0.812246 0.0 0.0 0.0 0.034035 0.0 1.261013 1.689229 806.0 0.0 0.0 0.0 0.0 30.0 0.997318 0.99996 380563 101645 0.010043 0.002682 37892425 0.0 67 -11.2903 -0.0012 37922265
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.704681 0.295311 0.786191 0.213809 168 280 436 441978 0.999505 347479 94499 623225 261175 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed 27 0.0 0.0 0.0 0.0 0.060848 0.373042 0.503102 0.541882 0.891203 1.802398 1.154532 1.293415 0.874281 0.681713 0.756039 0.748776 0.611533 0.439718 0.0 0.0 0.0 0.0 1.116617 1.635608 806.0 0.0 0.0 0.0 0.0 25.0 0.997764 0.999967 446135 103312 0.009656 0.002236 46204919 0.0 67 -11.2903 -0.0012 46390665
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.273051 0.726941 0.284774 0.715226 168 280 436 441978 0.999505 125864 316114 241488 642912 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 altera_v3_targets_postQC_hg38.bed 27 0.002814 0.0 0.0 0.0 0.010392 0.002356 0.075949 0.009041 0.431246 2.540792 1.138018 2.159773 1.148987 0.02533 0.050908 0.389583 0.006267 0.0 0.050661 0.0 0.002111 0.0 4.723542 1.942057 806.0 0.0 0.0 0.0 0.0 166.0 0.989306 0.999702 56934 54683 0.011134 0.010694 5113361 0.0 67 -11.2903 -0.0012 5116424
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.030647 0.969346 0.044265 0.955735 168 280 436 441978 0.999505 19564 422414 27104 857296 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 altera_v3_targets_coding_postQC_hg38.bed 27 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.030231 0.362339 0.491036 0.656447 1.32161 2.326313 0.532787 4.90097 2.764183 0.063544 0.0 0.614263 0.0 0.0 0.0 0.902486 1.981796 586.0 0.0 0.0 0.0 0.0 0.0 0.996595 1.0 6265 5562 0.003835 0.003405 1633455 0.0 67 -11.2903 -0.0012 1633455
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.257706 0.742286 0.269489 0.730511 168 280 436 441978 0.999505 119108 322870 227917 656483 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 altera_v3_targets_noncoding_postQC_hg38.bed 27 0.002577 0.0 0.005583 0.0 0.005492 0.034372 0.076961 0.039608 2.269468 2.097957 1.303431 2.718113 1.85116 0.424398 0.019476 0.173155 0.0033 0.113655 0.0 0.0 0.001782 0.0 6.517132 1.99418 806.0 0.0 0.0 0.0 0.0 381.0 0.985884 0.999562 50669 49121 0.01456 0.014116 3479906 0.0 67 -11.2903 -0.0012 3482969
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.413797 0.586195 0.509401 0.490599 168 280 436 441978 0.999505 225144 216834 365965 518435 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed 27 0.0 0.0 0.0 0.163319 0.0 0.437225 0.563049 0.875181 0.862121 0.914777 0.934987 0.99772 0.983696 1.4433 1.473768 1.965278 1.572433 0.022475 0.0 0.0 0.416759 0.0 0.723479 1.70641 422.0 0.0 0.0 0.0 0.0 28.0 0.998566 1.0 322119 46600 0.009914 0.001434 32490522 0.0 67 -11.2903 -0.0012 32516152
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.0 0.999992 0.0 1.0 168 280 436 441978 0.999505 0 441978 0 884400 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 FINAL_hotspot_list_07302025_hg38_sorted.bed 27 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 73 0.0 67 -11.2903 -0.0012 73
Sig_18_Blood.md 999982 7 7e-06 884407 0.115577 442197 0.007347 0.992645 0.009057 0.990943 168 280 436 441978 0.999505 4003 437975 6498 877902 307.417657 125.665527 115575 0.981787 0.945841 0.945841 144973902 foresight_clarity_targets_hg38.bed 27 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.768442 0.15022 0.612957 0.0 2.014405 0.970049 3.318241 1.448768 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.666941 1.98342 266.0 0.0 0.0 0.0 0.0 0.0 0.998226 1.0 4705 1182 0.007062 0.001774 666239 0.0 67 -11.2903 -0.0012 667386
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