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Filename
HCC1395_tumor_full_basic_stats.tsv
Full Path
s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/daq_exclude_controls/daq-exclude-ctrl-20260608-220255/reports/raw_qc/seqtool/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
Size
4.9 KB
Workflow Run
daq-exclude-ctrl-20260608-220255
Published
Jun 08, 2026 3:16 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.67209 0.327905 0.770536 0.229464 159 265 414 414949 0.998849 319733 95216 558413 272443 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed 22 0.0 0.0 0.0 0.0 0.0 0.121106 0.372444 0.40275 0.701526 1.390145 0.964232 1.342879 0.925106 0.940034 0.951489 1.421121 0.959815 0.0 0.0 0.0 0.0 0.0 1.116645 1.777627 622.0 0.0 0.0 0.0 0.0 26.0 0.997229 1.0 371427 104985 0.009802 0.002771 37892425 0.0 76 -15.1661 -0.0016 37922265
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.695869 0.304126 0.773538 0.226462 159 265 414 414949 0.998849 320979 93970 578170 252686 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed 22 0.0 0.0 0.0 0.0 0.0 0.311819 0.472293 0.494157 0.869246 1.668326 1.168395 1.311729 0.891582 0.787703 0.85219 0.814329 0.712713 0.453126 0.0 0.0 0.0 0.0 0.997416 1.358546 622.0 0.0 0.0 0.0 0.0 22.0 0.997662 1.0 431955 108009 0.009349 0.002338 46204919 0.0 76 -15.1661 -0.0016 46390665
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.230929 0.769066 0.240205 0.759795 159 265 414 414949 0.998849 99673 315276 191870 638986 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 altera_v3_targets_postQC_hg38.bed 22 0.0 0.0 0.0 0.0 0.0 0.0 0.119748 0.004876 0.450887 2.422812 1.192407 2.289167 1.06257 0.022935 0.047834 0.437929 0.0 0.0 0.0 0.0 0.0 0.0 3.687251 2.011725 622.0 0.0 0.0 0.0 0.0 127.0 0.989721 1.0 56784 52558 0.011105 0.010279 5113361 0.0 76 -15.1661 -0.0016 5116424
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.026551 0.973444 0.03713 0.96287 159 265 414 414949 0.998849 15407 399542 22060 808796 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 altera_v3_targets_coding_postQC_hg38.bed 22 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.010901 0.395451 0.551137 0.660292 1.33075 1.962793 0.509781 5.914162 3.172241 0.0 0.0 0.0 0.0 0.0 0.0 0.728002 2.005771 508.0 0.0 0.0 0.0 0.0 0.0 0.997016 1.0 6358 4875 0.003892 0.002984 1633455 0.0 76 -15.1661 -0.0016 1633455
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.218128 0.781867 0.227585 0.772415 159 265 414 414949 0.998849 94436 320513 181234 649622 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 altera_v3_targets_noncoding_postQC_hg38.bed 22 0.0 0.0 0.0 0.0 0.0 0.027334 0.100692 0.036849 2.015533 2.210669 1.370586 2.891683 1.862824 0.340656 0.00963 0.190256 0.0 0.084348 0.0 0.0 0.0 0.0 5.076311 1.946193 622.0 0.0 0.0 0.0 0.0 289.0 0.986298 1.0 50426 47683 0.014491 0.013702 3479906 0.0 76 -15.1661 -0.0016 3482969
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.445619 0.554376 0.539071 0.460929 159 265 414 414949 0.998849 223687 191262 370247 460609 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed 22 0.0 0.0 0.0 0.0 0.0 0.298296 0.470552 0.765705 0.788982 0.842263 0.914763 1.008892 1.042356 1.601038 1.645242 2.189495 1.789898 0.0 0.0 0.0 0.343979 0.0 0.718654 1.711118 376.0 0.0 0.0 0.0 0.0 23.0 0.998392 1.0 313259 52252 0.009642 0.001608 32490522 0.0 76 -15.1661 -0.0016 32516152
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.0 0.999995 0.0 1.0 159 265 414 414949 0.998849 0 414949 0 830856 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 FINAL_hotspot_list_07302025_hg38_sorted.bed 22 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 73 0.0 76 -15.1661 -0.0016 73
HCC1395_tumor.md 999980 4 4e-06 830860 0.169123 415427 0.007187 0.992809 0.00871 0.991291 159 265 414 414949 0.998849 3614 411335 5971 824885 291.923995 119.878181 169120 0.981974 0.949782 0.949782 143959508 foresight_clarity_targets_hg38.bed 22 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.69768 0.2083 0.605756 0.015081 1.82423 1.052643 3.475409 1.559151 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.615946 1.986219 241.0 0.0 0.0 0.0 0.0 0.0 0.998511 1.0 4472 992 0.006712 0.001489 666239 0.0 76 -15.1661 -0.0016 667386
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