name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.67209	0.327905	0.770536	0.229464	159	265	414	414949	0.998849	319733	95216	558413	272443	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed	22	0.0	0.0	0.0	0.0	0.0	0.121106	0.372444	0.40275	0.701526	1.390145	0.964232	1.342879	0.925106	0.940034	0.951489	1.421121	0.959815	0.0	0.0	0.0	0.0	0.0	1.116645	1.777627	622.0	0.0	0.0	0.0	0.0	26.0	0.997229	1.0	371427	104985	0.009802	0.002771	37892425	0.0	76	-15.1661	-0.0016	37922265
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.695869	0.304126	0.773538	0.226462	159	265	414	414949	0.998849	320979	93970	578170	252686	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed	22	0.0	0.0	0.0	0.0	0.0	0.311819	0.472293	0.494157	0.869246	1.668326	1.168395	1.311729	0.891582	0.787703	0.85219	0.814329	0.712713	0.453126	0.0	0.0	0.0	0.0	0.997416	1.358546	622.0	0.0	0.0	0.0	0.0	22.0	0.997662	1.0	431955	108009	0.009349	0.002338	46204919	0.0	76	-15.1661	-0.0016	46390665
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.230929	0.769066	0.240205	0.759795	159	265	414	414949	0.998849	99673	315276	191870	638986	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	altera_v3_targets_postQC_hg38.bed	22	0.0	0.0	0.0	0.0	0.0	0.0	0.119748	0.004876	0.450887	2.422812	1.192407	2.289167	1.06257	0.022935	0.047834	0.437929	0.0	0.0	0.0	0.0	0.0	0.0	3.687251	2.011725	622.0	0.0	0.0	0.0	0.0	127.0	0.989721	1.0	56784	52558	0.011105	0.010279	5113361	0.0	76	-15.1661	-0.0016	5116424
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.026551	0.973444	0.03713	0.96287	159	265	414	414949	0.998849	15407	399542	22060	808796	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	altera_v3_targets_coding_postQC_hg38.bed	22	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.010901	0.395451	0.551137	0.660292	1.33075	1.962793	0.509781	5.914162	3.172241	0.0	0.0	0.0	0.0	0.0	0.0	0.728002	2.005771	508.0	0.0	0.0	0.0	0.0	0.0	0.997016	1.0	6358	4875	0.003892	0.002984	1633455	0.0	76	-15.1661	-0.0016	1633455
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.218128	0.781867	0.227585	0.772415	159	265	414	414949	0.998849	94436	320513	181234	649622	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	altera_v3_targets_noncoding_postQC_hg38.bed	22	0.0	0.0	0.0	0.0	0.0	0.027334	0.100692	0.036849	2.015533	2.210669	1.370586	2.891683	1.862824	0.340656	0.00963	0.190256	0.0	0.084348	0.0	0.0	0.0	0.0	5.076311	1.946193	622.0	0.0	0.0	0.0	0.0	289.0	0.986298	1.0	50426	47683	0.014491	0.013702	3479906	0.0	76	-15.1661	-0.0016	3482969
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.445619	0.554376	0.539071	0.460929	159	265	414	414949	0.998849	223687	191262	370247	460609	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed	22	0.0	0.0	0.0	0.0	0.0	0.298296	0.470552	0.765705	0.788982	0.842263	0.914763	1.008892	1.042356	1.601038	1.645242	2.189495	1.789898	0.0	0.0	0.0	0.343979	0.0	0.718654	1.711118	376.0	0.0	0.0	0.0	0.0	23.0	0.998392	1.0	313259	52252	0.009642	0.001608	32490522	0.0	76	-15.1661	-0.0016	32516152
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.0	0.999995	0.0	1.0	159	265	414	414949	0.998849	0	414949	0	830856	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	FINAL_hotspot_list_07302025_hg38_sorted.bed	22	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	1.0	0	0	0.0	0.0	73	0.0	76	-15.1661	-0.0016	73
HCC1395_tumor.md	999980	4	4e-06	830860	0.169123	415427	0.007187	0.992809	0.00871	0.991291	159	265	414	414949	0.998849	3614	411335	5971	824885	291.923995	119.878181	169120	0.981974	0.949782	0.949782	143959508	foresight_clarity_targets_hg38.bed	22	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.69768	0.2083	0.605756	0.015081	1.82423	1.052643	3.475409	1.559151	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.615946	1.986219	241.0	0.0	0.0	0.0	0.0	0.0	0.998511	1.0	4472	992	0.006712	0.001489	666239	0.0	76	-15.1661	-0.0016	667386