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Filename
HCC1395_BL_full_basic_stats.tsv
Full Path
s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/daq_exclude_controls/daq-exclude-ctrl-20260608-220255/reports/raw_qc/seqtool/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
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4.9 KB
Workflow Run
daq-exclude-ctrl-20260608-220255
Published
Jun 08, 2026 3:16 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.672452 0.327537 0.772698 0.227302 164 275 427 426416 0.999304 329491 96925 573897 279533 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed 31 0.0 0.0 0.0 0.0 0.0 0.164524 0.341746 0.401986 0.693862 1.470801 0.962833 1.351509 0.905018 0.86383 0.903077 1.354504 0.892638 0.0 0.0 0.0 0.0 0.0 1.179182 1.736714 744.0 0.0 0.0 0.0 0.0 29.0 0.9974 0.999997 376613 98531 0.009939 0.0026 37892425 0.0 76 -15.3642 -0.0019 37922265
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.695524 0.304466 0.775208 0.224792 164 275 427 426416 0.999304 330561 95855 593587 259843 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed 31 0.0 0.0 0.0 0.0 0.0 0.332204 0.459183 0.49569 0.858773 1.775565 1.151069 1.335899 0.878077 0.718928 0.798472 0.804112 0.65934 0.513974 0.0 0.0 0.0 0.0 1.046143 1.678139 744.0 0.0 0.0 0.0 0.0 24.0 0.99784 0.999997 438802 99799 0.009497 0.00216 46204919 0.0 76 -15.3642 -0.0019 46390665
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.252801 0.747189 0.263975 0.736025 164 275 427 426416 0.999304 112563 313853 215750 637680 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 altera_v3_targets_postQC_hg38.bed 31 0.0 0.0 0.0 0.0 0.0 0.0 0.084764 0.006763 0.421979 2.510319 1.157079 2.268685 1.056296 0.022542 0.059568 0.43487 0.0 0.0 0.0 0.0 0.0 0.0 4.188256 1.942377 744.0 0.0 0.0 0.0 0.0 149.0 0.989541 0.999976 56608 53479 0.011071 0.010459 5113361 0.0 76 -15.3642 -0.0019 5116424
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.030424 0.969566 0.042904 0.957096 164 275 427 426416 0.999304 18295 408121 25965 827465 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 altera_v3_targets_coding_postQC_hg38.bed 31 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.006565 0.345469 0.48658 0.698089 1.335382 2.231224 0.443325 5.325637 3.130953 0.0 0.0 0.0 0.0 0.0 0.0 0.879222 1.995704 582.0 0.0 0.0 0.0 0.0 0.0 0.996627 1.0 6359 5510 0.003893 0.003373 1633455 0.0 76 -15.3642 -0.0019 1633455
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.237115 0.762875 0.248213 0.751787 164 275 427 426416 0.999304 105842 320574 202363 651067 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 altera_v3_targets_noncoding_postQC_hg38.bed 31 0.0 0.0 0.0 0.0 0.0 0.029849 0.081049 0.038557 2.195826 2.104445 1.321901 2.872422 1.869365 0.341324 0.018884 0.189946 0.0 0.091581 0.0 0.0 0.0 0.0 5.741505 1.963404 744.0 0.0 0.0 0.0 0.0 342.0 0.986215 0.999964 50249 47969 0.01444 0.013785 3479906 0.0 76 -15.3642 -0.0019 3482969
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.424765 0.575224 0.519157 0.480843 164 275 427 426416 0.999304 221377 205039 362511 490919 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed 31 0.0 0.0 0.0 0.0 0.0 0.420127 0.503568 0.788772 0.80948 0.869336 0.939034 1.002805 1.015391 1.51877 1.606688 2.132869 1.725778 0.0 0.0 0.0 0.416929 0.0 0.712114 1.717744 412.0 0.0 0.0 0.0 0.0 26.0 0.998624 1.0 318365 44719 0.009799 0.001376 32490522 0.0 76 -15.3642 -0.0019 32516152
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.0 0.999989 0.0 1.0 164 275 427 426416 0.999304 0 426416 0 853430 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 FINAL_hotspot_list_07302025_hg38_sorted.bed 31 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 73 0.0 76 -15.3642 -0.0019 73
HCC1395_BL.md 999992 9 9e-06 853439 0.146554 426713 0.007957 0.992032 0.009671 0.990329 164 275 427 426416 0.999304 4124 422292 6791 846639 301.595461 123.55658 146553 0.982024 0.945774 0.945774 144359392 foresight_clarity_targets_hg38.bed 31 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.752477 0.196578 0.603909 0.005397 1.862742 1.011962 3.380005 1.65602 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.705061 1.987368 257.0 0.0 0.0 0.0 0.0 0.0 0.997725 1.0 4843 1516 0.007269 0.002275 666239 0.0 76 -15.3642 -0.0019 667386
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