Runs
daq-exclude-..0608-220255
Processes
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BCL_TO_FASTQ:BCLCONVERT
8
DAQ:FLOWCELL_QC
1
DAQ:CAT_FASTQ
4
FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ
4
FASTQ_NGSCHECKMATE:NGSCHECKMATE_VAFNCM
1
DAQ:ESTIMATEGENDER
4
DAQ:MERGE_GENDER
1
DAQ:FASTP
32
DAQ:SENTIEON_BWAMEM
32
DAQ:SAMTOOLS_MERGE
4
DAQ:MARKDUPLICATES_SENTIEON
4
BAM_POSTDEDUP_QC:SAMTOOLS_STATS
4
BAM_POSTDEDUP_QC:MOSDEPTH
4
BAM_POSTDEDUP_QC:SENTIEON_MULTIPLE_METRICS
4
BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS
32
BAM_POSTDEDUP_QC:SEQTOOL
4
SENTIEON_BQSR:QUALCAL_TABLE
4
SENTIEON_BQSR:QUALCAL_APPLY
4
DAQ:AGGREGATE_POSTDEDUP_QC
1
DAQ:QC_JSON_TO_CSV
1
DAQ:MULTIQC
1
DAQ:WRITE_TRACKER_YML
1
DAQ:GENERATE_RESULTS_CSV
1
GERMLINE_CNV:ClusterPanelRegions
1
GERMLINE_CNV:CalcPanelCoverage
4
GERMLINE_CNV:ProcessBatch
1
GERMLINE_CNV:ModelSingle
2659
GERMLINE_CNV:AggregateBatchPerSampleData
4
DAQ:SAMTOOLS_IDXSTATS_COUNT
4
DAQ:WRITE_SKIPPED_CONTROL_METRICS
BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2
3
BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNFILTER
3
BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC
27
BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS
3
BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS
3
VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV
3
VCF_SOMATIC_SNV_INDEL:PREP_STRELKA_INDEL
3
VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT
3
VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES
3
VCF_SOMATIC_SNV_INDEL:WHATSHAP
4
VCF_SOMATIC_SNV_INDEL:CONCAT_WHATSHAP_VCFS
3
VCF_SOMATIC_SNV_INDEL:ENSEMBLVEP_VEP
3
VCF_SOMATIC_SNV_INDEL:TABIX_VEP
3
VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS
3
VCF_SOMATIC_SNV_INDEL:ANNOTATE_BED_INFO
3
VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF
3
VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL
3
CONTROL_SOMATIC_VC:MSISENSOR2_MSI
3
CONTROL_SOMATIC_VC:MIMSI_ANALYZE
3
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER
5
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC
1
VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY
1
VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP
1
VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION
1
VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER
1
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION
1
CONTROL_GERMLINE_VC:GERMLINE_CNV
1
CONTROL_GERMLINE_VC:BGZIPTABIX_GERMLINE_CNV
1
CONTROL_VARIANT_CALLING:TAR_CONTROL_VC_OUTPUTS
4
POSITIVE_SOMATIC_METRICS:MSI
2
POSITIVE_SOMATIC_METRICS:MIMSI
2
POSITIVE_SOMATIC_METRICS:TMB
2
POSITIVE_SOMATIC_METRICS:POSITIVE_SOMATIC_SNV_INDEL
2
POSITIVE_SOMATIC_METRICS:POSITIVE_SOMATIC_CNV
NEGATIVE_SOMATIC_METRICS:MSI
1
NEGATIVE_SOMATIC_METRICS:MIMSI
1
NEGATIVE_SOMATIC_METRICS:TMB
1
NEGATIVE_SOMATIC_METRICS:NEGATIVE_SOMATIC_SNV_INDEL
1
NEGATIVE_SOMATIC_METRICS:NEGATIVE_SOMATIC_CNV
GERMLINE_METRICS:GERMLINE_SNV_INDEL
1
GERMLINE_METRICS:GERMLINE_HLA
GERMLINE_METRICS:GERMLINE_CNV_METRICS
1
CONTROL_METRICS:MERGE_CONTROL_METRICS
1
SOMATIC_CNV_REF_BUILDER:SOMA_CNV_PROBE_COUNTS
1
SOMATIC_CNV_REF_BUILDER:SOMA_CNV_BUILD_REFERENCE
1