File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/ec73dabbd208fd6e96e9ca6a4a2657/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-imk0c_gt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:36,466 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:37,244 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:37,413 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:38,316 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:38,482 - cnv_pipe.batch.run_model - INFO - Processing cluster 1616 with 191 probes
2026-06-08 22:23:38,852 - cnv_pipe.batch.run_model.cluster1616 - INFO - Child process started for cluster 1616 with 191 probes
2026-06-08 22:24:34,670 - cnv_pipe.batch.run_model.cluster1616 - INFO - Child process finished cluster 1616. Wrote cluster_1616_samples.csv and cluster_1616_params.csv
2026-06-08 22:24:34,671 - cnv_pipe.batch.run_model - INFO - Cluster 1616 finished in 56.19 seconds. Status: SUCCESS