msi -b 2 -d 1500_dropped_panel_with_boosted_msi_regions.tsv -e xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed -t HCC1395_BL.recalibrated.bam -n reference-NA12878-downsampled-500k.bam -o negative_somatic_control_1_xgen Start at:  Mon Jun  8 22:17:04 2026

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