Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/24234692f6d41f91d96d3bbe5f2779/germline_control_1.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/7e61fad0dae6d1f3078aa28e1fc59f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/7e61fad0dae6d1f3078aa28e1fc59f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/21e50443944e3ff158de73ae75ee62/germline_control_1.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_1.mpileup.gz
Found 18 positions with indel observations
Annotating VCF: germline_control_1.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_1.haplotyper.split.vcf.gz'
Output written to: germline_control_1.entropy.vcf