Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a00499008cce9a6175076ba0d303d1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ded0dc28f0bedef0afd0b3c848896c/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ded0dc28f0bedef0afd0b3c848896c/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a00499008cce9a6175076ba0d303d1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:16.743668Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:16.744501Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:16.744515Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:16.744520Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:16.744524Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXG16rUs'
[2026-06-08T22:17:16.744528Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:16.744533Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:16.744538Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:16.744541Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:17:16.744545Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:16.744549Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:16.744552Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:16.744556Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:16.744560Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:16.745261Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:16.745385Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:16.751127Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:16.752027Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:16.752110Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:16.752404Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:16.752687Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753079Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753174Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753248Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753370Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753438Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753555Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753645Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.753781Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.754009Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.754499Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.754678Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.754893Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.755600Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.756125Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.757924Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.758038Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.758163Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.758230Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.758523Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:16.758780Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.758941Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.759542Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.759769Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.759886Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.759949Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760064Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760129Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760257Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760329Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760447Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760514Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760634Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760696Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.760825Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761097Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761543Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761611Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761721Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761781Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761892Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.761954Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.762068Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.762130Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.762591Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.762729Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763321Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763445Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763562Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763657Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763778Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763844Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.763957Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.764020Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.764134Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.764223Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.764521Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.764978Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765093Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765158Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765268Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765329Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765442Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765505Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765612Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765678Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765785Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.765845Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.783317Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.783418Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.783493Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.783679Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.783755Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.783844Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.785062Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.785532Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.786113Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.786173Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:16.789534Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.790191Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.790570Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.790910Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.791639Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.792320Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.793268Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.794802Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.796064Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.803680Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:17:16.805422Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:17:16.808890Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:16.812828Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:17:16.817788Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:16.819703Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:17:16.821078Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:17:17.517275Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:17:17.518441Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.519337Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.522706Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:18.486494Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.487377Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.491326Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:17:18.803110Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.804139Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.808728Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:18.869207Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.869325Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.870191Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.870827Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.875537Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:18.985463Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.985584Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.986382Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.987011Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.991333Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:17:18.992158Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:19.052303Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.053187Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.056894Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:17:19.061369Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.062132Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.065842Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:17:19.126843Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.127647Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.131219Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:19.131729Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.132466Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.136103Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:17:19.197267Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.198075Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.202061Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:17:19.262662Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.263577Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.267524Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:17:19.296472Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.297292Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.300913Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:17:19.361880Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.362724Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.366893Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:19.427627Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.428512Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.432528Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:17:19.693929Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.694722Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.698478Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:17:19.759252Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.760013Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.763372Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:17:20.028289Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:17:20.075309Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.076136Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.079835Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:17:20.240985Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.241735Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.245586Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:17:20.757697Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.758692Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.762770Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:20.823300Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.824548Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.828507Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:17:20.989475Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.989570Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.990476Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.990902Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.994962Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:17:20.996199Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:21.056119Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.056840Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.059746Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:17:21.121026Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.122069Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.125204Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:17:21.386764Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.386894Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.387880Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.388442Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.392103Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:17:21.393131Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:21.454638Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.454765Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.455630Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.456047Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.459492Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:17:21.461148Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:21.520921Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.521036Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.521849Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.522347Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.525730Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:21.569459Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:21.586819Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.586896Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.587892Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.588492Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.591545Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:21.638904Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:17:21.653029Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.653117Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.654159Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.654650Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.658171Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:21.689719Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:21.719286Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719382Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.720170Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.720715Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724001Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:21.725372Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:21.785048Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.785147Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.785873Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.786409Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.790078Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:17:21.830024Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:21.850900Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.850989Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.851034Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.851688Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.852102Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.852625Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.856431Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:17:21.859562Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:17:21.886419Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:21.917755Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.917843Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.918515Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.919178Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922741Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:17:21.923891Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:21.983803Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.984617Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.988103Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:17:22.048790Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.049530Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.052062Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.052987Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.054799Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:22.056056Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:17:22.117736Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.117866Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.118517Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.119241Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.123418Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:22.125197Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:17:22.184196Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.184302Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.184931Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.185437Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.189115Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:17:22.190331Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:17:22.250315Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.250428Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.251049Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.254123Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:17:22.315418Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.981184Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.981690Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.985454Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:23.046227Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.160533Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.161006Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.164147Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:23.225430Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.490179Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.490637Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.493743Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:23.554990Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.869876Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.870378Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.873712Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:17:23.934645Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.099176Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.099650Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103057Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:17:24.164022Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.829907Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.830391Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.833386Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:17:24.894497Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.894774Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.894926Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.895325Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.896038Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.900090Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:24.901488Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:24.902501Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:24.928692Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.928763Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.928986Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.929431Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.931636Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.933265Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:24.933987Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:24.965042Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.965109Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.965297Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.968364Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:24.997585Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.316661Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:35.633237Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:35.633237Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] 
[2026-06-08T22:17:35.633237Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:35.633319Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] 
[2026-06-08T22:17:35.633328Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:35.633334Z] [nf-98a00499008cce9a6175076ba0d303d1-f12b4-h6sds] [577_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec