Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/94c5aa137d4bc67f2627376c75c2cd/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/896d0cd5c28034b6782d19cb71105b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/896d0cd5c28034b6782d19cb71105b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/94c5aa137d4bc67f2627376c75c2cd/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/af990d64ac735ce3cf23a3394f4cab/germline_control_1.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/af990d64ac735ce3cf23a3394f4cab/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.w26Vqe
Merging 1 temporary files
Done
Cleaning