File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/78ede85d424f0c3f057f97a10c6f41/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8__pu65k because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:31,482 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:32,406 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:32,582 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:33,742 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:33,812 - cnv_pipe.batch.run_model - INFO - Processing cluster 1579 with 176 probes
2026-06-08 22:23:34,215 - cnv_pipe.batch.run_model.cluster1579 - INFO - Child process started for cluster 1579 with 176 probes
2026-06-08 22:24:29,055 - cnv_pipe.batch.run_model.cluster1579 - INFO - Child process finished cluster 1579. Wrote cluster_1579_samples.csv and cluster_1579_params.csv
2026-06-08 22:24:29,057 - cnv_pipe.batch.run_model - INFO - Cluster 1579 finished in 55.24 seconds. Status: SUCCESS