File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/03e34e96875478ab1cdc7c67d39f84/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-babul092 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:23,212 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:23,990 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:24,154 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:25,160 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:25,228 - cnv_pipe.batch.run_model - INFO - Processing cluster 1871 with 199 probes
2026-06-08 22:24:25,622 - cnv_pipe.batch.run_model.cluster1871 - INFO - Child process started for cluster 1871 with 199 probes
2026-06-08 22:25:22,787 - cnv_pipe.batch.run_model.cluster1871 - INFO - Child process finished cluster 1871. Wrote cluster_1871_samples.csv and cluster_1871_params.csv
2026-06-08 22:25:22,789 - cnv_pipe.batch.run_model - INFO - Cluster 1871 finished in 57.56 seconds. Status: SUCCESS