Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/cade6ae7d235beca4f3870fff234f2/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/cade6ae7d235beca4f3870fff234f2/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/51e0e00f1c1d044e5fe84d39487e29/negative_somatic_control_1.tnseq.filtered.vcf.gz ==> STAGING COMPLETE (4 inputs) Lines total/split/joined/realigned/mismatch_removed/dup_removed/skipped: 136/16/0/35/0/0/0