Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/601772304568b45fff9fce446c2b06/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/601772304568b45fff9fce446c2b06/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr12_102480219-102480663.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:24.070962Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:24.072144Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:24.072173Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:24.072178Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:24.072183Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX0lFoHH'
[2026-06-08T22:17:24.072188Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:24.072194Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:24.072197Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:24.072201Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:24.072204Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:24.072208Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:24.072212Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:24.072215Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:24.072219Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:24.073235Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:24.073316Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:24.079682Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:24.080530Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:24.080776Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:24.081267Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:24.081719Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.082527Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.082657Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.083017Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.083380Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.083989Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.084129Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.084289Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.084416Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.084623Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.087119Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:24.087235Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.087752Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088011Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088333Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088416Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088545Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088618Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088740Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.088814Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.089011Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.089092Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.089216Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.089294Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.089725Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.089923Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090054Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090129Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090244Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090316Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090434Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090540Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090663Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090730Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090847Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.090913Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.091149Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.091279Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.091764Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092315Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092533Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092615Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092742Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092815Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092931Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.092998Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.093121Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.093375Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094086Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094194Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094322Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094391Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094504Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094567Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094679Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094745Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.094960Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.095603Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.095794Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.095873Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.096003Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.096070Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.096188Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.096258Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.096380Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.096584Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097121Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097191Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097305Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097376Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097485Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097548Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097655Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.097719Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.099541Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.099711Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.100024Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.100674Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.100790Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.100857Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.100970Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101032Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101146Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101209Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101318Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101385Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101495Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101575Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.101691Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.102120Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103309Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103434Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103574Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103649Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103773Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103838Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.103977Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.104269Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119060Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119220Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119395Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119613Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119685Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119785Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119853Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.119994Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.120066Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.120117Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:24.122891Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.123918Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.124997Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.127019Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.127605Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.128227Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-08T22:17:24.128914Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.129908Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.130654Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.131185Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.134558Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:17:24.138315Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-08T22:17:24.142157Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T22:17:24.144247Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-08T22:17:24.147378Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:17:24.147648Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-08T22:17:24.150313Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-08T22:17:24.248826Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.248946Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.248979Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.250138Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.250896Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.251765Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.257345Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:17:24.257693Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-08T22:17:25.573023Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.574109Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.577816Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-08T22:17:25.789470Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.790867Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.794995Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-08T22:17:25.955998Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.957229Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.960712Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:17:26.021922Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.022045Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.023099Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.023875Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.028943Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-08T22:17:26.030181Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T22:17:26.059137Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.060217Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.064151Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:17:26.125232Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.126313Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.130149Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:17:26.133660Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:17:26.135986Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.136060Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.136921Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.137676Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.140936Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-08T22:17:26.141878Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T22:17:26.171701Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.172722Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.175702Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-08T22:17:26.206417Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.206526Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.207492Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.207813Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.211656Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-08T22:17:26.212583Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T22:17:26.213416Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.214250Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.216887Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-08T22:17:26.278370Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.279440Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.283253Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-08T22:17:26.344292Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.345321Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.348706Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-08T22:17:26.511409Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.512466Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.515663Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-08T22:17:26.877963Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.878980Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.882381Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-08T22:17:26.943944Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.945048Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.948635Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T22:17:27.009695Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.010699Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.014215Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-08T22:17:27.125638Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.125747Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.126687Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.127161Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.131845Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:17:27.132327Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-08T22:17:27.144453Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.145415Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.148786Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-08T22:17:27.177977Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.178921Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.182378Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-08T22:17:27.183028Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.183845Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.187666Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-08T22:17:27.192170Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.193169Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.196477Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-08T22:17:27.859337Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.860923Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.864470Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:17:27.925636Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.926997Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.930523Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:17:27.959368Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.960831Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.964184Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-08T22:17:27.993075Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.994308Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.997833Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T22:17:28.002535Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.003607Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.006722Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-08T22:17:28.035708Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.037004Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.040766Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-08T22:17:28.069840Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.070767Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.073944Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:17:28.075223Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.075998Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.079052Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T22:17:28.108461Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.109488Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.112711Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-08T22:17:28.142273Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.142373Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.143303Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.143701Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.147875Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-08T22:17:28.148860Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-08T22:17:28.176697Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.177772Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.181237Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:17:28.181581Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.182326Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.185224Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-08T22:17:28.186250Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.187019Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.190570Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-08T22:17:28.251733Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.251844Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.251892Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.252808Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.253462Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.254187Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.257609Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:17:28.259438Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:17:28.260601Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:17:28.321133Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.321230Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.321269Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.322148Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.322470Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.322663Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.326975Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-08T22:17:28.328362Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-08T22:17:28.329686Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:17:28.389954Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.390052Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.390089Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.390933Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.391697Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.394541Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.394869Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:17:28.397623Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-08T22:17:28.399952Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-08T22:17:28.413172Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.413990Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.417718Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-08T22:17:28.431046Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.431135Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.431817Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.432475Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.435782Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:17:28.436642Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-08T22:17:28.466448Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.467295Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.469791Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.470576Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.471467Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-08T22:17:28.474076Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:17:28.535606Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.536380Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.539024Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-08T22:17:28.600492Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.601179Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.603959Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-08T22:17:28.633467Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.634137Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.636716Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-08T22:17:28.798380Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.799165Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.802097Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:17:29.214156Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.214863Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.217903Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-08T22:17:29.529970Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.530699Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.533559Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-08T22:17:29.595183Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.595807Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.598516Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:17:29.629215Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.629790Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.632468Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-08T22:17:29.694100Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.694686Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.697676Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-08T22:17:29.759038Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.759611Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.762540Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-08T22:17:29.823808Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.824344Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.827001Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-08T22:17:29.889405Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.889964Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.892771Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-08T22:17:29.954238Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.954791Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.957589Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-08T22:17:30.019047Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.019615Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.022450Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-08T22:17:30.083964Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.084044Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.084563Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.085133Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.088342Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-08T22:17:30.089129Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.089350Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:17:30.090102Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.092813Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-08T22:17:30.122222Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.122294Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.122773Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.123355Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.125638Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.126159Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-08T22:17:30.127964Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.128353Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-08T22:17:30.130953Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-08T22:17:30.160506Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.160577Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.161041Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.162281Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.162899Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.164710Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-08T22:17:30.166243Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.167601Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-08T22:17:30.169310Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:17:30.198367Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.198876Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.201758Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:17:30.231000Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.231487Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.234388Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:17:30.263705Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.263779Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.264224Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.265707Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.267681Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-08T22:17:30.268523Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:17:30.269574Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.270026Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.272620Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-08T22:17:30.285988Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.286469Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.289162Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-08T22:17:30.302259Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.302663Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.302715Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.318854Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.318927Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.319300Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.321783Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-08T22:17:30.352148Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.466376Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.466795Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.469052Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-08T22:17:30.498720Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.813213Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.813651Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.815800Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-08T22:17:30.846496Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.010710Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.011110Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.013717Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-08T22:17:31.043304Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.043587Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.043711Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.044220Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.044477Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.049534Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.050048Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.050314Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:31.076725Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.076883Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.077615Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.077925Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.079811Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.081571Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.082332Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.113102Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.113173Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.113343Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.115707Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:31.145258Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.666138Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:42.961241Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:42.961241Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] 
[2026-06-08T22:17:42.961241Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:42.961310Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] 
[2026-06-08T22:17:42.961317Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:42.961325Z] [nf-c0601772304568b45fff9fce446c2b06-a091f-ptknp] [645_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec