Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/d1e96bfdd243f35cecbdbd35c5ccc5/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/68b1ccca933ad5566798fa9cd41b4a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/68b1ccca933ad5566798fa9cd41b4a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mr8o43za because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:22:52,278 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:22:53,171 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:22:53,353 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:22:54,321 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:22:54,503 - cnv_pipe.batch.run_model - INFO - Processing cluster 1172 with 106 probes
2026-06-08 22:22:54,874 - cnv_pipe.batch.run_model.cluster1172 - INFO - Child process started for cluster 1172 with 106 probes
2026-06-08 22:23:29,630 - cnv_pipe.batch.run_model.cluster1172 - INFO - Child process finished cluster 1172. Wrote cluster_1172_samples.csv and cluster_1172_params.csv
2026-06-08 22:23:29,631 - cnv_pipe.batch.run_model - INFO - Cluster 1172 finished in 35.13 seconds. Status: SUCCESS