[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX6Bzges/chr4_22420786-22421189.bed.gz.tbi [W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX6Bzges/chr4_22420786-22421189.bed.gz.tbi [W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX6Bzges/chr4_22420786-22421189.bed.gz.tbi [2026-06-08T22:17:21.907001Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Initiating pyFlow run [2026-06-08T22:17:21.907770Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow [2026-06-08T22:17:21.907785Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] pyFlowVersion: 1.1.20 [2026-06-08T22:17:21.907789Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0 [2026-06-08T22:17:21.907794Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6Bzges' [2026-06-08T22:17:21.907797Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8' [2026-06-08T22:17:21.907802Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] mode: local [2026-06-08T22:17:21.907806Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] nCores: 8 [2026-06-08T22:17:21.907810Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] memMb: 3096076 [2026-06-08T22:17:21.907813Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data [2026-06-08T22:17:21.907817Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] isDryRun: False [2026-06-08T22:17:21.907820Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] isContinue: False [2026-06-08T22:17:21.907824Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] isForceContinue: True [2026-06-08T22:17:21.907828Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [RunParameters] mailTo: '' [2026-06-08T22:17:21.908616Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2026-06-08T22:17:21.908727Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10 [2026-06-08T22:17:21.914293Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow [2026-06-08T22:17:21.915052Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow [2026-06-08T22:17:21.915427Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow [2026-06-08T22:17:21.915941Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow [2026-06-08T22:17:21.916229Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.916696Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.916788Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.916860Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.916976Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.917047Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.917167Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.917231Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.917370Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.917632Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.918076Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.918246Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.918416Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.918577Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.918812Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.919239Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.919321Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.919509Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.919643Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.919893Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.920148Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.920429Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.922109Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.922733Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node [2026-06-08T22:17:21.923252Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923333Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923470Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923547Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923681Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923759Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923892Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.923971Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.924511Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.924917Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925062Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925138Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925274Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925348Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925493Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925567Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925702Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925774Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.925992Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.926435Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.926572Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.926647Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.926785Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.926862Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.927061Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.927140Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.927273Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.927351Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.927533Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.927648Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928274Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928353Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928490Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928566Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928697Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928772Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928908Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.928980Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.929114Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.929189Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.929462Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.929966Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930107Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930179Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930316Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930394Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930528Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930612Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930744Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.930820Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.932338Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.932998Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933151Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933229Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933366Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933441Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933576Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933648Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933784Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.933857Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.934065Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.934685Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.934819Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.934903Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935038Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935114Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935255Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935339Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935470Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935543Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935726Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.935803Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.953573Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.954273Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.954483Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:21.954554Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.955598Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.955675Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.955950Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.956092Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.956436Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.956579Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.957168Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.957504Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.958048Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome' [2026-06-08T22:17:21.958180Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.958498Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow [2026-06-08T22:17:21.958900Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.960495Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.961495Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.964024Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:21.964687Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node [2026-06-08T22:17:21.971123Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node [2026-06-08T22:17:21.971752Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node [2026-06-08T22:17:21.977562Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node [2026-06-08T22:17:21.977821Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node [2026-06-08T22:17:21.981528Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node [2026-06-08T22:17:21.985283Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node [2026-06-08T22:17:22.048584Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.049393Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.053729Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node [2026-06-08T22:17:22.515209Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.516254Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.520295Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node [2026-06-08T22:17:22.781891Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.784194Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.787453Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node [2026-06-08T22:17:22.848766Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.850734Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.853897Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node [2026-06-08T22:17:22.914953Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.916922Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.919530Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node [2026-06-08T22:17:22.924698Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.926463Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.929644Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node [2026-06-08T22:17:22.934497Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.936169Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.938586Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node [2026-06-08T22:17:22.968168Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.968263Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.970397Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.970790Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.972829Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:22.973364Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node [2026-06-08T22:17:22.975206Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node [2026-06-08T22:17:22.975843Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome' [2026-06-08T22:17:22.978659Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node [2026-06-08T22:17:23.240508Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:23.241462Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:23.244752Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node [2026-06-08T22:17:23.417187Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node [2026-06-08T22:17:23.456044Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:23.457007Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome' [2026-06-08T22:17:23.460015Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node [2026-06-08T22:17:23.571383Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:23.572314Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:23.575367Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node [2026-06-08T22:17:23.736822Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:23.737759Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:23.740745Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node [2026-06-08T22:17:23.902523Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:23.903497Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:23.907319Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node [2026-06-08T22:17:23.968060Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:23.969054Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:23.972794Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node [2026-06-08T22:17:24.134650Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.135664Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.139156Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node [2026-06-08T22:17:24.151963Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.153145Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.153402Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.156204Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.157203Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node [2026-06-08T22:17:24.159716Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node [2026-06-08T22:17:24.221327Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.222339Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.225584Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node [2026-06-08T22:17:24.286619Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.286716Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.287730Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.288625Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.292149Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node [2026-06-08T22:17:24.293693Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node [2026-06-08T22:17:24.354351Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.354460Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.355422Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.355906Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.359482Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node [2026-06-08T22:17:24.361028Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node [2026-06-08T22:17:24.422747Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.422851Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.422877Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.423769Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.424438Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.426844Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.427435Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node [2026-06-08T22:17:24.430553Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node [2026-06-08T22:17:24.431702Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node [2026-06-08T22:17:24.492501Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.492572Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.493462Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.493802Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.496826Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node [2026-06-08T22:17:24.497808Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node [2026-06-08T22:17:24.557777Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.557879Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.558830Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.559578Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.563308Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node [2026-06-08T22:17:24.564209Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node [2026-06-08T22:17:24.625638Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.626555Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.630154Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node [2026-06-08T22:17:25.092286Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.093166Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.096676Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node [2026-06-08T22:17:25.157848Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.158876Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.162427Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node [2026-06-08T22:17:25.175414Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.176238Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.179397Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node [2026-06-08T22:17:25.240466Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.241380Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.244477Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node [2026-06-08T22:17:25.305879Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.306766Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.309572Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node [2026-06-08T22:17:25.371141Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.372066Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.375289Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node [2026-06-08T22:17:25.586853Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.587732Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.591613Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node [2026-06-08T22:17:25.652677Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.653547Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.656959Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node [2026-06-08T22:17:25.718114Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.718921Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.722363Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node [2026-06-08T22:17:25.723023Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.723717Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.726659Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node [2026-06-08T22:17:25.788213Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.789063Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.792182Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node [2026-06-08T22:17:25.854613Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.855453Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.859894Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node [2026-06-08T22:17:25.970886Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.970995Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.971037Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.971811Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.972430Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.974806Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.976905Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node [2026-06-08T22:17:25.977681Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node [2026-06-08T22:17:25.980525Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node [2026-06-08T22:17:26.041742Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.041848Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.042820Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.043312Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.047558Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node [2026-06-08T22:17:26.048756Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node [2026-06-08T22:17:26.107879Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.109239Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.112753Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node [2026-06-08T22:17:26.574455Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.575594Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.579263Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node [2026-06-08T22:17:26.640099Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.640188Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.641108Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.641638Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.645219Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node [2026-06-08T22:17:26.647075Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node [2026-06-08T22:17:26.706002Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.707032Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.709505Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.710564Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.710960Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node [2026-06-08T22:17:26.714011Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node [2026-06-08T22:17:26.774876Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.775825Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.779627Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node [2026-06-08T22:17:26.840224Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.841006Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.844567Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node [2026-06-08T22:17:27.006094Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.007084Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.007501Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.008221Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.011464Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node [2026-06-08T22:17:27.012635Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node [2026-06-08T22:17:27.072722Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.073478Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.076623Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node [2026-06-08T22:17:27.138013Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.138777Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.141950Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node [2026-06-08T22:17:27.204439Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.205144Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.208890Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node [2026-06-08T22:17:27.770845Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.770934Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.771541Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.772119Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.775887Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node [2026-06-08T22:17:27.776958Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node [2026-06-08T22:17:27.838999Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.839719Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.842762Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node [2026-06-08T22:17:27.954326Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.955018Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.958172Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node [2026-06-08T22:17:28.019390Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.020086Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.023791Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node [2026-06-08T22:17:28.028287Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.028888Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.031719Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node [2026-06-08T22:17:28.093397Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.094098Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.097522Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node [2026-06-08T22:17:28.126623Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.127302Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.130692Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node [2026-06-08T22:17:28.135493Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.136131Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.139676Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node [2026-06-08T22:17:28.169105Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.169773Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.172863Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node [2026-06-08T22:17:28.178202Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.178765Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.182761Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node [2026-06-08T22:17:28.212039Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.212692Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.215897Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node [2026-06-08T22:17:28.228843Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.229440Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.232646Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node [2026-06-08T22:17:28.262006Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.262638Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.266591Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node [2026-06-08T22:17:28.477922Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.478709Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.482474Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node [2026-06-08T22:17:28.543858Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.544549Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.548057Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node [2026-06-08T22:17:28.577378Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.578160Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.581701Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node [2026-06-08T22:17:28.582468Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.582572Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.583104Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.584089Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.587902Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node [2026-06-08T22:17:28.589003Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node [2026-06-08T22:17:28.618348Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.622116Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.786485Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.787110Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.791337Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node [2026-06-08T22:17:28.852073Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.916295Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.916932Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.921223Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node [2026-06-08T22:17:28.982022Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.046394Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.046957Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.051238Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node [2026-06-08T22:17:29.112091Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.577477Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.578094Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.581215Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node [2026-06-08T22:17:29.642792Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.642884Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.643403Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.646378Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node [2026-06-08T22:17:29.708864Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.574690Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.575239Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.579194Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node [2026-06-08T22:17:30.640376Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.640737Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.640907Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.641559Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.643921Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.645914Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node [2026-06-08T22:17:30.646691Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node [2026-06-08T22:17:30.649112Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node [2026-06-08T22:17:30.677779Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.677859Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.677884Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.678170Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.678798Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.683062Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node [2026-06-08T22:17:30.684029Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node [2026-06-08T22:17:30.713910Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.715183Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.715355Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.717995Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node [2026-06-08T22:17:30.748406Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:32.515738Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow [2026-06-08T22:17:40.796188Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Strelka somatic workflow successfully completed. [2026-06-08T22:17:40.796188Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [2026-06-08T22:17:40.796188Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] workflow version: 2.9.10 [2026-06-08T22:17:40.796246Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] [2026-06-08T22:17:40.796254Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Workflow successfully completed all tasks [2026-06-08T22:17:40.796261Z] [nf-05c3f48e42b42f75a3f3cee7607d1f51-e5b66-tjs6b] [694_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec