Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9d47b98cdeb67bb7d043e5260c2049/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a954511b40e76d107ffbd247f3a138/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a954511b40e76d107ffbd247f3a138/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9d47b98cdeb67bb7d043e5260c2049/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:24.346440Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:24.346993Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:24.347005Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:24.347010Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:24.347016Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPRnZyL'
[2026-06-08T22:17:24.347020Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:24.347027Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:24.347037Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:24.347041Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-08T22:17:24.347049Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:24.347054Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:24.347060Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:24.347066Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:24.347071Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:24.347438Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:24.347528Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:24.354482Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:24.355000Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:24.355260Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:24.355465Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:24.355710Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.356456Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.356567Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.356671Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.356902Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.357107Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.357324Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.357528Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.357859Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.358467Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.358634Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.358882Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.360292Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.360598Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:24.360908Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361001Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361140Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361220Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361356Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361437Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361669Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.361912Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.362258Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.362340Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.362479Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.362555Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.363088Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.363172Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.363561Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.363793Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.363936Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364046Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364186Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364262Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364399Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364477Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364615Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.364695Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.365068Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.365385Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.365522Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.365598Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.365763Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.365864Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.366005Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.366101Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.366242Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.366659Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367069Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367157Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367294Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367373Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367509Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367584Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367722Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367798Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.367936Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.368124Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.368713Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.368793Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.368933Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.369007Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.369145Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.369224Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.386236Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.386931Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.387118Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.387173Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.388056Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.388210Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.388289Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.388556Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.388947Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.389174Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.389352Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.390899Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.391275Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.391757Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.392185Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.392615Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.392933Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.393395Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.393780Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:24.399254Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:17:24.402034Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:17:24.406262Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:24.410516Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:17:24.413919Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:17:24.705399Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:17:24.972124Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.972948Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.975704Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:17:25.004647Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.005414Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.008000Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:17:25.009246Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:17:25.012948Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.012985Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.013656Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.013977Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.017866Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:25.018683Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:17:25.078666Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.079432Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.082891Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:17:25.615311Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:25.644255Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.644328Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.644354Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.645095Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.645461Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.645797Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.649515Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:17:25.651398Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:25.652588Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:17:25.711618Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.711729Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.711753Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.712516Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.712797Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.713323Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.718529Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:17:25.720052Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:17:26.529470Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.530362Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.533655Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:17:26.945234Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.946073Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.949633Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:26.950108Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.950758Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.953708Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:17:27.064778Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.064842Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.065561Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.065931Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.069091Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:17:27.070811Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:27.082858Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:27.098075Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.098136Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.098860Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.099114Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.102055Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:27.103497Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:27.115301Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.116086Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.118139Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.119381Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:17:27.119467Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.123499Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:27.135412Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.136107Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.138888Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:17:27.139669Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.140299Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.143030Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:27.172079Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.172147Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.172185Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.172229Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.172927Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.173183Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.173766Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.174249Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.178062Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:27.178478Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:17:27.179988Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:17:27.181289Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:17:27.207180Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.208162Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.210863Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.211316Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:17:27.212082Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.212361Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.213486Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.215468Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:27.217924Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:17:27.279310Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.280306Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.283098Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:27.344369Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.345336Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.348305Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:27.353307Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.354255Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.357548Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:27.386368Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.387369Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.390993Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:27.419993Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.420979Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.424067Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:17:27.453077Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.454346Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.454722Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.456349Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.459479Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:17:27.460600Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:17:27.520491Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.521177Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.524157Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:17:27.585246Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.585320Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.585948Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.586294Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.589596Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:17:27.618089Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:17:27.650450Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.650525Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.651064Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.651385Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.654475Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:27.655409Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:27.683565Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.684269Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.686190Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.686871Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.687066Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:17:27.689531Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:17:27.718840Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.718910Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.719398Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.719688Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.722799Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:27.723820Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:27.783641Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784166Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.787376Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:27.848278Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.848878Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.851678Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:17:27.880710Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.881203Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.883762Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:17:27.944970Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.945026Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.945471Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.948053Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:27.977174Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.091028Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.091439Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.094558Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:17:28.123409Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.287351Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.287745Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.290140Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:17:28.319403Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.323030Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.323464Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.326159Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:17:28.387215Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.901857Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.902382Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.905056Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:17:28.909979Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.910395Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.912968Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:28.942127Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.942189Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.056058Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.056497Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.059032Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:29.088275Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.088540Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.088688Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.088960Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.089220Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.093808Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:29.095119Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:29.122170Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:29.153375Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.153442Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.153474Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.153712Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.154005Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.156827Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:29.188269Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:29.218648Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.218705Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.218932Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.221500Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:29.250714Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.065573Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:34.885495Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:34.885495Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] 
[2026-06-08T22:17:34.885495Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:34.885541Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] 
[2026-06-08T22:17:34.885549Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:34.885556Z] [nf-eb9d47b98cdeb67bb7d043e5260c2049-381ea-z5h4f] [756_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec