[2026-06-08T22:17:24.324981Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Initiating pyFlow run [2026-06-08T22:17:24.325532Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow [2026-06-08T22:17:24.325544Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] pyFlowVersion: 1.1.20 [2026-06-08T22:17:24.325550Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0 [2026-06-08T22:17:24.325555Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXVaeYmL' [2026-06-08T22:17:24.325560Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8' [2026-06-08T22:17:24.325569Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] mode: local [2026-06-08T22:17:24.325574Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] nCores: 8 [2026-06-08T22:17:24.325580Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] memMb: 1523801 [2026-06-08T22:17:24.325584Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data [2026-06-08T22:17:24.325590Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] isDryRun: False [2026-06-08T22:17:24.325595Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] isContinue: False [2026-06-08T22:17:24.325604Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] isForceContinue: True [2026-06-08T22:17:24.325610Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [RunParameters] mailTo: '' [2026-06-08T22:17:24.326030Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2026-06-08T22:17:24.326134Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10 [2026-06-08T22:17:24.333009Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow [2026-06-08T22:17:24.333551Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow [2026-06-08T22:17:24.333743Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow [2026-06-08T22:17:24.333945Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow [2026-06-08T22:17:24.334168Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.335174Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.335298Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.335630Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.335832Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.336014Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.336149Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.336898Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.337159Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.337405Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.339308Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.339838Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node [2026-06-08T22:17:24.340195Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.340408Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.340556Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.340639Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.340777Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.340853Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.340996Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.341073Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.341302Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.341383Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.341859Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342031Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342426Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342505Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342647Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342728Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342866Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.342945Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.343080Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.343175Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.343318Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.343415Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.343633Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344028Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344165Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344250Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344386Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344462Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344602Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344679Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344817Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.344898Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.345040Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.345225Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.345782Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.345957Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346112Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346194Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346331Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346410Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346542Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346616Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.346821Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.347442Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.364047Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.364537Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.364633Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.364828Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.364917Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.365024Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.365108Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.365239Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.365326Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome' [2026-06-08T22:17:24.365389Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow [2026-06-08T22:17:24.366579Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.367322Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.367739Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.368258Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.368759Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.369592Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.370428Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.372634Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.373484Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.379054Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node [2026-06-08T22:17:24.383569Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node [2026-06-08T22:17:24.387654Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node [2026-06-08T22:17:24.389279Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node [2026-06-08T22:17:24.390142Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node [2026-06-08T22:17:24.392851Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node [2026-06-08T22:17:24.395213Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node [2026-06-08T22:17:24.461602Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node [2026-06-08T22:17:24.490179Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.490234Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.490267Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.490983Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.491169Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.491547Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.494487Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node [2026-06-08T22:17:24.496738Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node [2026-06-08T22:17:24.498398Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node [2026-06-08T22:17:24.555931Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.556628Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.560427Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node [2026-06-08T22:17:24.572816Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:24.573450Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:24.576413Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node [2026-06-08T22:17:25.589082Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.589844Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.593211Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node [2026-06-08T22:17:25.605944Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.606689Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.609350Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node [2026-06-08T22:17:25.638373Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.638993Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.641979Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node [2026-06-08T22:17:25.703143Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.703829Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.706891Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node [2026-06-08T22:17:25.767943Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.768600Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.771718Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node [2026-06-08T22:17:25.832575Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:25.833326Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:25.836464Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node [2026-06-08T22:17:26.097847Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.098632Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.101505Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node [2026-06-08T22:17:26.130641Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.131380Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.134322Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node [2026-06-08T22:17:26.946492Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:26.947182Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:26.949785Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node [2026-06-08T22:17:27.010976Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.011681Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.014118Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node [2026-06-08T22:17:27.027324Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.028009Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.030965Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node [2026-06-08T22:17:27.059988Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.060054Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.060706Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.060962Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.064789Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node [2026-06-08T22:17:27.066057Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node [2026-06-08T22:17:27.175744Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.176336Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.179273Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node [2026-06-08T22:17:27.440566Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.441287Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.443998Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node [2026-06-08T22:17:27.505115Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.505855Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.508872Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node [2026-06-08T22:17:27.970596Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:27.971221Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome' [2026-06-08T22:17:27.974479Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node [2026-06-08T22:17:28.003163Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.003746Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.006664Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node [2026-06-08T22:17:28.067506Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.068060Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.071128Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node [2026-06-08T22:17:28.132137Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.132804Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.136007Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node [2026-06-08T22:17:28.164776Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.165428Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.168601Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node [2026-06-08T22:17:28.279611Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.280180Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.282783Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node [2026-06-08T22:17:28.311847Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.312341Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.315631Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node [2026-06-08T22:17:28.328460Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.329058Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.332089Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node [2026-06-08T22:17:28.393034Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.393089Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.393582Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.393836Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.396894Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node [2026-06-08T22:17:28.397309Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node [2026-06-08T22:17:28.409606Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.410107Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.412264Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node [2026-06-08T22:17:28.425645Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.426195Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.426497Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.427209Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.429895Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node [2026-06-08T22:17:28.431061Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node [2026-06-08T22:17:28.443070Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.443632Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.446035Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node [2026-06-08T22:17:28.475252Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.475300Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.475772Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.476041Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.479091Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node [2026-06-08T22:17:28.480073Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node [2026-06-08T22:17:28.508065Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.508586Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.510987Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node [2026-06-08T22:17:28.622579Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.623465Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.626350Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node [2026-06-08T22:17:28.687582Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:28.688353Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:28.690824Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node [2026-06-08T22:17:28.720195Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.285442Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.286266Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.288912Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node [2026-06-08T22:17:29.302137Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.302947Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.305386Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node [2026-06-08T22:17:29.318877Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.334910Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.649550Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.650260Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.652863Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node [2026-06-08T22:17:29.682184Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.896638Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:29.897339Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome' [2026-06-08T22:17:29.899776Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node [2026-06-08T22:17:29.929240Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.394323Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.394970Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.397418Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node [2026-06-08T22:17:30.426766Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.741270Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.741957Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.744812Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node [2026-06-08T22:17:30.774080Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.888239Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.888655Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.891024Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node [2026-06-08T22:17:30.920400Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.920665Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.920809Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.921035Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.921480Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.925613Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node [2026-06-08T22:17:30.926807Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node [2026-06-08T22:17:30.927991Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node [2026-06-08T22:17:30.953520Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.953582Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.953609Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.953851Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.954098Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.956878Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node [2026-06-08T22:17:30.957754Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node [2026-06-08T22:17:30.986014Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.986085Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:30.986304Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome' [2026-06-08T22:17:30.988413Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node [2026-06-08T22:17:31.017910Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-08T22:17:34.936420Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow [2026-06-08T22:17:43.213363Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Strelka somatic workflow successfully completed. [2026-06-08T22:17:43.213363Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [2026-06-08T22:17:43.213363Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] workflow version: 2.9.10 [2026-06-08T22:17:43.213435Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] [2026-06-08T22:17:43.213447Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Workflow successfully completed all tasks [2026-06-08T22:17:43.213460Z] [nf-0117000b8f125aa90aada83ceb19baa5-16e51-5n76r] [759_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec